RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA416866" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA416866 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2970375 2970375 PRJNA416866_P_NODE_9563_length_209_cov_0.864865_g9419_i0 PRJNA416866 9563 209 0.864865 1.80756785 Deinococcus aetherius 200252 Bacteria Bacteria 207 3.7e-49   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g9419 i0 90.123 0.909090909090909 162 12 78 2 30 191 1495654 1495497 Deinococcus aetherius ST0316 DNA, complete genome blastn 190 207 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
10011862 10011862 PRJNA416866_P_NODE_8008_length_228_cov_1.485030_g7864_i0 PRJNA416866 8008 228 1.48503 3.3858684 Deinococcus 1298 Bacteria Bacteria 383 6.35e-102   NTclustered gi|2264081587|gb|CP094462.1| 1299 g7864 i0 96.93 211.324561403509 228 7 100 0 1 228 1217168 1217395 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 48182 383 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
10623563 10623563 PRJNA416866_P_NODE_9649_length_209_cov_0.864865_g9505_i0 PRJNA416866 9649 209 0.864865 1.80756785 Deinococcus metallilatus 1211322 Bacteria Bacteria 276 9.99e-70   NTclustered gi|1609451317|gb|CP038512.1| 1211322 g9505 i0 90.431 78.1722488038278 209 20 100 0 1 209 601410 601618 Deinococcus metallilatus strain MA1002 chromosome blastn 16338 276 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metallilatus
20821403 20821403 PRJNA416866_P_NODE_6417_length_257_cov_1.142857_g6273_i0 PRJNA416866 6417 257 1.142857 2.93714249 Deinococcus radiophilus 32062 Bacteria Bacteria 396 9.379999999999997e-106   NTclustered gi|2152123021|gb|CP086380.1| 32062 g6273 i0 94.275 435.575875486381 262 10 100 5 1 257 1813735 1813996 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 111943 396 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
23371759 23371759 PRJNA416866_P_NODE_10899_length_204_cov_0.895105_g10755_i0 PRJNA416866 10899 204 0.895105 1.8260142 Deinococcus aetherius 200252 Bacteria Bacteria 148 2.21e-31   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g10755 i0 80.465 1.50490196078431 215 24 99 10 2 204 177119 177327 Deinococcus aetherius ST0316 DNA, complete genome blastn 307 148 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
23371800 23371800 PRJNA416866_P_NODE_8839_length_216_cov_1.664516_g8695_i0 PRJNA416866 8839 216 1.664516 3.59535456 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 394 2.75e-105   NTclustered gi|821341785|gb|CP011389.1| 1309411 g8695 i0 99.537 186.157407407407 216 1 100 0 1 216 1886304 1886089 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 40210 394 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;