RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA416866", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA416866 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28433671 28433671 PRJNA416866_P_NODE_7326_length_239_cov_1.438202_g7182_i0 PRJNA416866 7326 239 1.438202 3.43730278 Bacteriovorax sp. Seq25_V 1201288 Bacteria Bacteria 50.8 4.96e-5   NR WP_021273525.1 1201288 g7182 i0 36.8 0.95397489539749 76 34 95.4 1 239 12 663 724 WP_021273525.1 CHASE domain-containing protein [Bacteriovorax sp. Seq25_V] diamond 228 50.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. Seq25_V
28496877 28496877 PRJNA416866_P_NODE_647_length_917_cov_3.029206_g533_i0 PRJNA416866 647 917 3.029206 27.77781902 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 374 2.46e-128   NR MBX9767865.1 2053517 g533 i0 90 0.657579062159215 201 20 65.8 0 249 851 1 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 603 374 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;