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contig_metadata

18 rows where bioproject = "PRJNA416866", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

  • Metazoa · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8072949 8072949 PRJNA416866_P_NODE_10727_length_205_cov_0.888889_g10583_i0 PRJNA416866 10727 205 0.888889 1.82222245 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 174 3.66e-39   NTclustered gi|150982261|gb|EF634719.1| 452809 g10583 i0 88.194 10.2048780487805 144 17 70 0 5 148 160 303 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 2092 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
24646047 24646047 PRJNA416866_P_NODE_8520_length_221_cov_0.950000_g8376_i0 PRJNA416866 8520 221 0.95 2.0995 Trichinella spiralis 6334 Nematoda Nematoda 63.9 9.05e-6   NTclustered gi|109716042|gb|AC187345.2| 6334 g8376 i0 93.182 0.597285067873303 44 1 20 1 12 55 117976 118017 Trichinella spiralis BAC clone TS195-4H12 from chromosome unknown, complete sequence blastn 132 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
26727021 26727021 PRJNA416866_P_NODE_8481_length_221_cov_1.600000_g8337_i0 PRJNA416866 8481 221 1.6 3.536 Gnathostoma spinigerum 75299 Nematoda Nematoda 65.5 8.01e-11   NR MFH4975108.1 75299 g8337 i0 59.7 1.710407239819 62 19 84.2 1 221 36 103 158 MFH4975108.1 hypothetical protein [Gnathostoma spinigerum] diamond 378 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
27138379 27138379 PRJNA416866_P_NODE_7582_length_235_cov_1.126437_g7438_i0 PRJNA416866 7582 235 1.126437 2.64712695 Caenorhabditis elegans 6239 Nematoda Nematoda 99.8 1.18e-22   NR NP_504575.1 6239 g7438 i0 59 2.98723404255319 78 30 99.6 1 1 234 33 108 NP_504575.1 Calreticulin [Caenorhabditis elegans] diamond 702 99.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27250241 27250241 PRJNA416866_P_NODE_7263_length_240_cov_1.430168_g7119_i0 PRJNA416866 7263 240 1.430168 3.4324032 Rhabditida 6236 Nematoda Nematoda 96.3 1.16e-22   NR CAD2189457.1 390850 g7119 i0 56.4 1.95 78 33 97.5 1 3 236 8 84 CAD2189457.1 unnamed protein product [Meloidogyne enterolobii] diamond 468 97.1 0.991761071060762 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
27376965 27376965 PRJNA416866_P_NODE_2063_length_477_cov_2.168269_g1920_i0 PRJNA416866 2063 477 2.168269 10.34264313 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.6 6.1e-6   NR KAL3120152.1 157864 g1920 i0 56.6 2.25786163522013 53 22 32.7 1 472 317 704 756 KAL3120152.1 hypothetical protein niasHT_008906 [Heterodera trifolii] diamond 1077 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28387027 28387027 PRJNA416866_P_NODE_10766_length_205_cov_0.888889_g10622_i0 PRJNA416866 10766 205 0.888889 1.82222245 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.2 2.47e-13   NR KAL3117111.1 157864 g10622 i0 48.5 6.80487804878049 66 34 96.6 0 205 8 148 213 KAL3117111.1 hypothetical protein niasHT_007514 [Heterodera trifolii] diamond 1395 73.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28875626 28875626 PRJNA416866_P_NODE_8788_length_217_cov_1.525641_g8644_i0 PRJNA416866 8788 217 1.525641 3.31064097 Gnathostoma spinigerum 75299 Nematoda Nematoda 69.7 8.18e-12   NR MFH4975774.1 75299 g8644 i0 45.1 3.92626728110599 71 39 98.2 0 3 215 702 772 MFH4975774.1 hypothetical protein [Gnathostoma spinigerum] diamond 852 69.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
28923677 28923677 PRJNA416866_P_NODE_6428_length_257_cov_0.969388_g6284_i0 PRJNA416866 6428 257 0.969388 2.49132716 Rhabditida 6236 Nematoda Nematoda 109 4.03e-27   NR VDK52909.1 6269 g6284 i0 75 5.96498054474708 72 18 84 0 222 7 1 72 VDK52909.1 unnamed protein product [Anisakis simplex] diamond 1533 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
29412284 29412284 PRJNA416866_P_NODE_4329_length_317_cov_0.937500_g4186_i0 PRJNA416866 4329 317 0.9375 2.971875 Aphelenchoides avenae 70226 Nematoda Nematoda 67.4 1.93e-10   NR KAH7729609.1 70226 g4186 i0 31.4 0.993690851735016 105 71 98.4 1 314 3 389 493 KAH7729609.1 Acyltransferase ChoActase/COT/CPT [Aphelenchoides avenae] diamond 315 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
30075458 30075458 PRJNA416866_P_NODE_10992_length_204_cov_0.895105_g10848_i0 PRJNA416866 10992 204 0.895105 1.8260142 Acanthocheilonema viteae 6277 Nematoda Nematoda 47.4 3.44e-4   NR VBB28430.1 6277 g10848 i0 67.6 3.80882352941176 37 12 54.4 0 204 94 157 193 VBB28430.1 unnamed protein product [Acanthocheilonema viteae] diamond 777 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
30155112 30155112 PRJNA416866_P_NODE_6092_length_264_cov_1.261084_g5948_i0 PRJNA416866 6092 264 1.261084 3.32926176 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 7.899999999999999e-24   NR AAK54043.1 6248 g5948 i0 52.9 14.7613636363636 85 37 96.6 1 10 264 144 225 AAK54043.1 G protein alpha subunit 3 [Strongyloides stercoralis] diamond 3897 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
30455092 30455092 PRJNA416866_P_NODE_10573_length_205_cov_0.888889_g10429_i0 PRJNA416866 10573 205 0.888889 1.82222245 Pristionchus pacificus 54126 Nematoda Nematoda 125 2.13e-31   NR KAF8376019.1 54126 g10429 i0 82.4 5.97073170731707 68 12 99.5 0 205 2 211 278 KAF8376019.1 rack-1 [Pristionchus pacificus] diamond 1224 125 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
31134534 31134534 PRJNA416866_P_NODE_9035_length_214_cov_0.803922_g8891_i0 PRJNA416866 9035 214 0.803922 1.72039308 root 1 Root_unresolved Root_unresolved 43.1 0.0183   NR GMT28504.1 1538716 g8891 i0 48.8 2.45327102803738 41 18 54.7 2 204 88 123 162 GMT28504.1 hypothetical protein PFISCL1PPCAC_19801, partial [Pristionchus fissidentatus] diamond 525 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
31845495 31845495 PRJNA416866_P_NODE_10057_length_207_cov_0.876712_g9913_i0 PRJNA416866 10057 207 0.876712 1.81479384 Mesorhabditis belari 2138241 Nematoda Nematoda 43.9 0.00275   NR CAJ0962865.1 2138241 g9913 i0 42.1 1.65217391304348 57 31 81.2 2 171 4 21 76 CAJ0962865.1 unnamed protein product, partial [Mesorhabditis belari] diamond 342 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
31845504 31845504 PRJNA416866_P_NODE_4677_length_304_cov_3.053498_g4533_i0 PRJNA416866 4677 304 3.053498 9.28263392 Gongylonema pulchrum 637853 Nematoda Nematoda 122 2.06e-33   NR VDN42325.1 637853 g4533 i0 67 4.55921052631579 91 30 89.8 0 274 2 4 94 VDN42325.1 unnamed protein product [Gongylonema pulchrum] diamond 1386 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
32225424 32225424 PRJNA416866_P_NODE_8698_length_218_cov_2.031847_g8554_i0 PRJNA416866 8698 218 2.031847 4.42942646 Meloidogyne enterolobii 390850 Nematoda Nematoda 49.7 9.55e-5   NR CAD2167694.1 390850 g8554 i0 45.8 1.21100917431193 48 26 66.1 0 169 26 16 63 CAD2167694.1 unnamed protein product [Meloidogyne enterolobii] diamond 264 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
32305522 32305522 PRJNA416866_P_NODE_4079_length_326_cov_2.698113_g3936_i0 PRJNA416866 4079 326 2.698113 8.79584838 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 83.2 5.53e-16   NR KFD46000.1 68888 g3936 i0 50 5.25460122699386 76 38 69.9 0 93 320 192 267 KFD46000.1 hypothetical protein M513_13117 [Trichuris suis] diamond 1713 83.6 0.995215311004785 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;