RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA416866", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6797401 6797401 PRJNA416866_P_NODE_10046_length_207_cov_0.876712_g9902_i0 PRJNA416866 10046 207 0.876712 1.81479384 Peronella japonica 262331 Echinodermata other_Eukaryota 54.7 0.005   NTclustered gi|606211636|dbj|AB779702.1| 262331 g9902 i0 100 0.140096618357488 29 0 14 0 94 122 1162 1190 Peronella japonica PjHox11/13b mRNA for transcription factor Hox11/13b, complete cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Clypeasteroida Laganidae Peronella Peronella japonica
19545501 19545501 PRJNA416866_P_NODE_7616_length_234_cov_2.173410_g7472_i0 PRJNA416866 7616 234 2.17341 5.0857794 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.021   NTclustered gi|2707444759|ref|XM_064105764.1| 7653 g7472 i0 100 0.358974358974359 28 0 12 0 94 121 4021 4048 PREDICTED: Lytechinus pictus nuclear protein localization protein 4 homolog (LOC129269441), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
26632434 26632434 PRJNA416866_P_NODE_6061_length_265_cov_1.254902_g5917_i0 PRJNA416866 6061 265 1.254902 3.3254903 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 66.2 2.61e-10   NR XP_030848995.1 7668 g5917 i0 47.1 1.53962264150943 68 29 75.8 2 201 1 419 480 XP_030848995.1 uncharacterized protein LOC100894123 [Strongylocentrotus purpuratus] diamond 408 66.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26822582 26822582 PRJNA416866_P_NODE_11561_length_202_cov_0.907801_g11417_i0 PRJNA416866 11561 202 0.907801 1.83375802 Diadema antillarum 105358 Echinodermata other_Eukaryota 47 6.75e-4   NR XP_071499744.1 105358 g11417 i0 41.1 3.60891089108911 56 31 80.2 2 3 164 246 301 XP_071499744.1 adhesion G-protein coupled receptor G2-like [Diadema antillarum] diamond 729 47 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
30328868 30328868 PRJNA416866_P_NODE_10372_length_206_cov_0.882759_g10228_i0 PRJNA416866 10372 206 0.882759 1.81848354 Anneissia japonica 1529436 Echinodermata other_Eukaryota 77.8 7.9e-15   NR XP_033108310.1 1529436 g10228 i0 51.4 9.81553398058252 70 28 94.7 3 9 203 12 80 XP_033108310.1 methionine aminopeptidase 1-like isoform X1 [Anneissia japonica] diamond 2022 77.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
31624163 31624163 PRJNA416866_P_NODE_9916_length_208_cov_0.870748_g9772_i0 PRJNA416866 9916 208 0.870748 1.81115584 Anneissia japonica 1529436 Echinodermata other_Eukaryota 56.6 2.9e-7   NR XP_033126247.1 1529436 g9772 i0 58.3 1.81730769230769 36 15 51.9 0 118 11 154 189 XP_033126247.1 3'-5' exoribonuclease 1-like [Anneissia japonica] diamond 378 56.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;