RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA416866", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29050253 29050253 PRJNA416866_P_NODE_8588_length_220_cov_1.144654_g8444_i0 PRJNA416866 8588 220 1.144654 2.5182388000000002 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 117 1.56e-30   NR CEO95778.1 37360 g8444 i0 80.8 7.02272727272727 73 14 99.5 0 1 219 157 229 CEO95778.1 hypothetical protein PBRA_004491 [Plasmodiophora brassicae] diamond 1545 117 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31687409 31687409 PRJNA416866_P_NODE_4537_length_309_cov_1.483871_g4393_i0 PRJNA416866 4537 309 1.483871 4.58516139 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 74.7 4.65e-13   NR CEO98042.1 37360 g4393 i0 49.3 1.35922330097087 69 35 67 0 309 103 407 475 CEO98042.1 hypothetical protein PBRA_006156 [Plasmodiophora brassicae] diamond 420 74.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32035446 32035446 PRJNA416866_P_NODE_1738_length_525_cov_2.144397_g1596_i0 PRJNA416866 1738 525 2.144397 11.25808425 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 171 7.070000000000002e-51   NR CEO99768.1 37360 g1596 i0 55.6 1.81142857142857 162 65 89.1 2 512 45 1 161 CEO99768.1 hypothetical protein PBRA_007502 [Plasmodiophora brassicae] diamond 951 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;