RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA416866", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419616 419616 PRJNA416866_P_NODE_3961_length_332_cov_1.900369_g3818_i0 PRJNA416866 3961 332 1.900369 6.30922508 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 558 1.51e-154   NTclustered gi|238617605|gb|FJ973380.1| 45107 g3818 i0 96.988 98.5421686746988 332 10 100 0 1 332 1234 1565 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 32716 558 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
22096096 22096096 PRJNA416866_P_NODE_5778_length_272_cov_1.341232_g5634_i0 PRJNA416866 5778 272 1.341232 3.64815104 Cercomonas lata 686763 SAR_Eukaryotes SAR_Eukaryotes 145 4e-30   NTclustered gi|262262874|gb|FJ797465.1| 686763 g5634 i0 90.09 39.4558823529412 111 11 41 0 161 271 406 296 Cercomonas lata strain C-85 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10732 145 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas lata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;