RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA416866", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA416866 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29349321 29349321 PRJNA416866_P_NODE_10329_length_206_cov_0.882759_g10185_i0 PRJNA416866 10329 206 0.882759 1.81848354 Chlamydiales bacterium 2047757 Bacteria Bacteria 84.3 1.72e-17   NR MDB2614324.1 2047757 g10185 i0 55.2 0.975728155339806 67 30 97.6 0 206 6 167 233 MDB2614324.1 FAD-binding oxidoreductase [Chlamydiales bacterium] diamond 201 84.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31529471 31529471 PRJNA416866_P_NODE_3736_length_344_cov_0.897527_g3593_i0 PRJNA416866 3736 344 0.897527 3.08749288 Chlamydiales bacterium 2047757 Bacteria Bacteria 78.2 1.96e-14   NR MDB2614324.1 2047757 g3593 i0 43.8 0.697674418604651 80 45 69.8 0 336 97 188 267 MDB2614324.1 FAD-binding oxidoreductase [Chlamydiales bacterium] diamond 240 78.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32098706 32098706 PRJNA416866_P_NODE_5458_length_280_cov_1.168950_g5314_i0 PRJNA416866 5458 280 1.16895 3.27306 Chlamydiia bacterium 2052156 Bacteria Bacteria 43.5 0.0182   NR MBI3900844.1 2052156 g5314 i0 33.3 0.739285714285714 69 46 73.9 0 240 34 18 86 MBI3900844.1 hypothetical protein [Chlamydiia bacterium] diamond 207 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
32856636 32856636 PRJNA416866_P_NODE_4820_length_299_cov_1.613445_g4676_i0 PRJNA416866 4820 299 1.613445 4.82420055 Parachlamydia sp. 2052048 Bacteria Bacteria 64.3 1.85e-9   NR MCE5316308.1 2052048 g4676 i0 38.9 0.903010033444816 90 55 90.3 0 5 274 469 558 MCE5316308.1 ankyrin repeat domain-containing protein [Parachlamydia sp.] diamond 270 64.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;