RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA416866", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 16 ✖

tax_clade 1

  • Discoba · 16 ✖

bioproject 1

  • PRJNA416866 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3634605 3634605 PRJNA416866_P_NODE_5243_length_286_cov_1.706667_g5099_i0 PRJNA416866 5243 286 1.706667 4.88106762 Naegleria 5761 Heterolobosea other_Eukaryota 158 5.4499999999999985e-34   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5099 i0 85.811 40.6398601398601 148 21 52 0 139 286 5050 5197 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 11623 158 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5523406 5523406 PRJNA416866_P_NODE_6245_length_260_cov_2.241206_g6101_i0 PRJNA416866 6245 260 2.241206 5.8271356 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 1.34e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g6101 i0 93.75 47.1307692307692 128 8 49 0 12 139 3979 3852 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12254 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
11898513 11898513 PRJNA416866_P_NODE_9350_length_210_cov_1.288591_g9206_i0 PRJNA416866 9350 210 1.288591 2.7060411 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 100 6.49e-17   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g9206 i0 92.754 9.71904761904762 69 5 33 0 116 184 4145 4213 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2041 100 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
19545470 19545470 PRJNA416866_P_NODE_2356_length_446_cov_0.997403_g2213_i0 PRJNA416866 2356 446 0.997403 4.44841738 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 318 3.85e-82   NTclustered gi|2124392890|ref|XM_044712220.1| 5763 g2213 i0 80.471 3.31165919282511 425 76 95 7 17 438 29 449 Naegleria fowleri uncharacterized protein (FDP41_008374), partial mRNA blastn 1477 318 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26600467 26600467 PRJNA416866_P_NODE_5301_length_284_cov_3.000000_g5157_i0 PRJNA416866 5301 284 3 8.52 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 77.4 4e-14   NR XP_002669434.1 5762 g5157 i0 53 1.70070422535211 83 34 85.6 5 243 1 896 975 XP_002669434.1 uncharacterized protein NAEGRDRAFT_82167 [Naegleria gruberi] diamond 483 77.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
26871074 26871074 PRJNA416866_P_NODE_8781_length_217_cov_1.641026_g8637_i0 PRJNA416866 8781 217 1.641026 3.56102642 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 1.45e-36   NR XP_002680626.1 5762 g8637 i0 84.7 114.442396313364 72 11 99.5 0 2 217 138 209 XP_002680626.1 prolyl-tRNA synthetase [Naegleria gruberi] diamond 24834 140 0.992857142857143 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27060592 27060592 PRJNA416866_P_NODE_11282_length_203_cov_0.901408_g11138_i0 PRJNA416866 11282 203 0.901408 1.82985824 Naegleria 5761 Heterolobosea other_Eukaryota 52 1.19e-5   NR XP_044561712.1 5763 g11138 i0 49 2.64532019704433 51 26 75.4 0 162 10 71 121 XP_044561712.1 uncharacterized protein FDP41_003652 [Naegleria fowleri] diamond 537 52 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27959942 27959942 PRJNA416866_P_NODE_1885_length_499_cov_3.296804_g1743_i0 PRJNA416866 1885 499 3.296804 16.45105196 Acrasis kona 1008807 Heterolobosea other_Eukaryota 89.7 2.6e-19   NR KAL0484069.1 1008807 g1743 i0 39.1 2.15831663326653 110 66 66.1 1 404 75 43 151 KAL0484069.1 coactosin [Acrasis kona] diamond 1077 89.7 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29744507 29744507 PRJNA416866_P_NODE_9870_length_208_cov_0.870748_g9726_i0 PRJNA416866 9870 208 0.870748 1.81115584 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.3 4.46e-19   NR XP_002677106.1 5762 g9726 i0 60 1.99038461538462 70 27 99.5 1 207 1 96 165 XP_002677106.1 uncharacterized protein NAEGRDRAFT_83145 [Naegleria gruberi] diamond 414 87 0.991954022988506 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29949281 29949281 PRJNA416866_P_NODE_11411_length_202_cov_1.815603_g11267_i0 PRJNA416866 11411 202 1.815603 3.66751806 Acrasis kona 1008807 Heterolobosea other_Eukaryota 110 8.160000000000001e-29   NR KAL0481392.1 1008807 g11267 i0 77.6 3.93564356435644 67 15 99.5 0 201 1 3 69 KAL0481392.1 ribosomal protein L44, partial [Acrasis kona] diamond 795 110 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30170237 30170237 PRJNA416866_P_NODE_3672_length_347_cov_2.290210_g3529_i0 PRJNA416866 3672 347 2.29021 7.9470287 Acrasis kona 1008807 Heterolobosea other_Eukaryota 101 4.42e-24   NR KAL0488449.1 1008807 g3529 i0 57.1 0.786743515850144 91 37 78.7 1 7 279 21 109 KAL0488449.1 hypothetical protein AKO1_015639 [Acrasis kona] diamond 273 101 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
31149404 31149404 PRJNA416866_P_NODE_6315_length_259_cov_1.292929_g6171_i0 PRJNA416866 6315 259 1.292929 3.34868611 Acrasis kona 1008807 Heterolobosea other_Eukaryota 56.2 8.14e-7   NR KAL0477841.1 1008807 g6171 i0 44.6 1.50579150579151 65 31 75.3 1 65 259 538 597 KAL0477841.1 hypothetical protein AKO1_005271 [Acrasis kona] diamond 390 56.2 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32035448 32035448 PRJNA416866_P_NODE_318_length_1263_cov_2.391847_g250_i0 PRJNA416866 318 1263 2.391847 30.20902761 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 135 7.53e-31   NR XP_002672528.1 5762 g250 i0 27.3 1.03562945368171 436 278 99 13 7 1257 106 521 XP_002672528.1 uncharacterized protein NAEGRDRAFT_59200 [Naegleria gruberi] diamond 1308 135 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32257290 32257290 PRJNA416866_P_NODE_11898_length_201_cov_0.914286_g11754_i0 PRJNA416866 11898 201 0.914286 1.83771486 Acrasis kona 1008807 Heterolobosea other_Eukaryota 106 6.38e-28   NR KAL0481688.1 1008807 g11754 i0 82.8 0.955223880597015 64 11 95.5 0 5 196 30 93 KAL0481688.1 ribosomal protein S25 [Acrasis kona] diamond 192 106 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32288967 32288967 PRJNA416866_P_NODE_3219_length_374_cov_1.536741_g3076_i0 PRJNA416866 3219 374 1.536741 5.74741134 Acrasis kona 1008807 Heterolobosea other_Eukaryota 168 7.03e-51   NR KAL0482313.1 1008807 g3076 i0 64.5 1.98930481283422 124 43 99.5 1 1 372 5 127 KAL0482313.1 peroxiredoxin [Acrasis kona] diamond 744 168 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32841692 32841692 PRJNA416866_P_NODE_9440_length_209_cov_1.297297_g9296_i0 PRJNA416866 9440 209 1.297297 2.71135073 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 2.5399999999999994e-23   NR XP_044551055.1 51637 g9296 i0 63.2 1.95215311004785 68 25 97.6 0 207 4 247 314 XP_044551055.1 uncharacterized protein C9374_002098 [Naegleria lovaniensis] diamond 408 101 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;