RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA416866" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA416866 · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17661258 17661258 PRJNA416866_P_NODE_11874_length_201_cov_0.914286_g11730_i0 PRJNA416866 11874 201 0.914286 1.83771486 Singekia 3031157 Root_unresolved Root_unresolved 132 2.18e-26   NTclustered gi|2206682174|gb|OM966647.1| 2925341 g11730 i0 95.238 35.2985074626866 84 3 41 1 1 83 2755 2838 Singekia montserratensis strain MONTSE19P8 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7095 132 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia montserratensis
26917392 26917392 PRJNA416866_P_NODE_10682_length_205_cov_0.888889_g10538_i0 PRJNA416866 10682 205 0.888889 1.82222245 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 68.2 2.35e-11   NR XP_013759182.1 461836 g10538 i0 60 0.804878048780488 55 22 80.5 0 170 6 364 418 XP_013759182.1 peptidase S8 and S53 domain-containing protein [Thecamonas trahens ATCC 50062] diamond 165 68.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29002385 29002385 PRJNA416866_P_NODE_10048_length_207_cov_0.876712_g9904_i0 PRJNA416866 10048 207 0.876712 1.81479384 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 75.5 5.03e-14   NR XP_013761142.1 461836 g9904 i0 54.4 0.985507246376812 68 31 98.6 0 205 2 132 199 XP_013761142.1 pyoverdine biosynthesis regulatory [Thecamonas trahens ATCC 50062] diamond 204 75.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29160038 29160038 PRJNA416866_P_NODE_6269_length_260_cov_1.286432_g6125_i0 PRJNA416866 6269 260 1.286432 3.3447232 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 54.7 2.78e-6   NR XP_013759207.1 461836 g6125 i0 65.7 0.403846153846154 35 12 40.4 0 3 107 466 500 XP_013759207.1 glucoamylase [Thecamonas trahens ATCC 50062] diamond 105 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31339467 31339467 PRJNA416866_P_NODE_2696_length_413_cov_1.352273_g2553_i0 PRJNA416866 2696 413 1.352273 5.58488749 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 64.3 6.22e-9   NR XP_013753190.1 461836 g2553 i0 52.1 0.690072639225182 48 23 34.9 0 412 269 338 385 XP_013753190.1 uncharacterized protein AMSG_12392 [Thecamonas trahens ATCC 50062] diamond 285 64.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31624153 31624153 PRJNA416866_P_NODE_11636_length_202_cov_0.907801_g11492_i0 PRJNA416866 11636 202 0.907801 1.83375802 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 65.1 2.89e-10   NR XP_013760162.1 461836 g11492 i0 56.7 5.46534653465347 60 25 89.1 1 180 1 388 446 XP_013760162.1 chloride channel 7 [Thecamonas trahens ATCC 50062] diamond 1104 65.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;