RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA416866", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA416866 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2970362 2970362 PRJNA416866_P_NODE_5963_length_267_cov_1.276699_g5819_i0 PRJNA416866 5963 267 1.276699 3.40878633 Amoeba proteus 5775 Tubulinea other_Eukaryota 176 1.4e-51   NR AAP88974.1 5775 g5819 i0 89.9 1 89 9 100 0 267 1 93 181 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 267 176 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
4246694 4246694 PRJNA416866_P_NODE_1524_length_564_cov_1.882704_g1384_i0 PRJNA416866 1524 564 1.882704 10.61845056 Chaos carolinense 160823 Tubulinea other_Eukaryota 258 4.21e-85   NR AFX73058.1 160823 g1384 i0 82.5 1.70212765957447 160 28 85.1 0 48 527 1 160 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 960 258 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
6186815 6186815 PRJNA416866_P_NODE_8345_length_223_cov_1.975309_g8201_i0 PRJNA416866 8345 223 1.975309 4.40493907 Chaos 160821 Tubulinea other_Eukaryota 353 4.849999999999999e-93   NTclustered gi|17902587|emb|AJ314606.1| 160822 g8201 i0 95.872 96.7443946188341 218 9 98 0 6 223 1132 1349 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 21574 353 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
10623527 10623527 PRJNA416866_P_NODE_309_length_1277_cov_2.953125_g242_i0 PRJNA416866 309 1277 2.953125 37.71140625 Copromyxa protea 931554 Tubulinea other_Eukaryota 1044 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g242 i0 81.62 2.85356303837118 1284 215 99 19 9 1277 1293 16 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3644 1044 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
14448543 14448543 PRJNA416866_P_NODE_432_length_1120_cov_2.827195_g242_i1 PRJNA416866 432 1120 2.827195 31.664584 Copromyxa protea 931554 Tubulinea other_Eukaryota 885 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g242 i1 81.041 2.97678571428571 1134 196 100 17 1 1120 16 1144 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3334 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
14448551 14448551 PRJNA416866_P_NODE_8212_length_225_cov_1.560976_g8068_i0 PRJNA416866 8212 225 1.560976 3.512196 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 202 1.88e-47   NTclustered gi|511487963|gb|JX898537.1| 1260765 g8068 i0 85.354 10.2044444444444 198 26 88 3 1 198 301 107 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2296 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
18935216 18935216 PRJNA416866_P_NODE_2955_length_393_cov_1.418675_g2812_i0 PRJNA416866 2955 393 1.418675 5.57539275 Chaos 160821 Tubulinea other_Eukaryota 207 7.58e-49   NTclustered gi|17902587|emb|AJ314606.1| 160822 g2812 i0 87.778 17.2315521628499 180 18 58 4 217 393 942 1120 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 6772 207 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
20821369 20821369 PRJNA416866_P_NODE_11057_length_204_cov_0.895105_g10913_i0 PRJNA416866 11057 204 0.895105 1.8260142 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 235 1.65e-57   NTclustered gi|145386791|gb|EF216916.1| 136459 g10913 i0 89.785 80.0343137254902 186 16 90 3 5 188 1327 1511 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 16327 235 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;