RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA415856" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415856 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419232 419232 PRJNA415856_P_NODE_23501_length_186_cov_1.489051_g23240_i0 PRJNA415856 23501 186 1.489051 2.76963486 Methanobrevibacter millerae 230361 Archaea Archaea 281 1.86e-71   NTclustered gi|968564921|gb|CP011266.1| 230361 g23240 i0 94.054 68.6881720430108 185 11 99 0 1 185 541982 542166 Methanobrevibacter millerae strain SM9, complete genome blastn 12776 281 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
4246344 4246344 PRJNA415856_P_NODE_28704_length_176_cov_2.425197_g28443_i0 PRJNA415856 28704 176 2.425197 4.26834672 Methanobrevibacter millerae 230361 Archaea Archaea 207 2.99e-49   NTclustered gi|968564921|gb|CP011266.1| 230361 g28443 i0 88.068 3.04545454545455 176 20 100 1 1 176 542826 543000 Methanobrevibacter millerae strain SM9, complete genome blastn 536 207 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
17660934 17660934 PRJNA415856_P_NODE_23354_length_186_cov_2.321168_g23093_i0 PRJNA415856 23354 186 2.321168 4.31737248 root 1 Root_unresolved Root_unresolved 344 2.34e-90   NTclustered gi|1294447101|gb|CP017803.1| 2173 g23093 i0 100 179.618279569892 186 0 100 0 1 186 266643 266458 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 33409 344 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
17660962 17660962 PRJNA415856_P_NODE_2674_length_611_cov_26.439502_g2436_i0 PRJNA415856 2674 611 26.439502 161.54535722 root 1 Root_unresolved Root_unresolved 1088 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g2436 i0 98.852 398.576104746318 610 7 99 0 1 610 3115894 3116503 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 243530 1088 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
20821033 20821033 PRJNA415856_P_NODE_30377_length_174_cov_1.224000_g30116_i0 PRJNA415856 30377 174 1.224 2.12976 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 298 1.7e-76   NTclustered gi|985614202|gb|CP010834.1| 1609968 g30116 i0 97.701 105 174 3 100 1 1 174 497437 497265 Methanobrevibacter sp. YE315, complete genome blastn 18270 298 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
25309718 25309718 PRJNA415856_P_NODE_52100_length_161_cov_0.910714_g51839_i0 PRJNA415856 52100 161 0.910714 1.46624954 Methanobrevibacter 2172 Archaea Archaea 298 1.56e-76   NTclustered gi|2791693311|gb|CP144200.1| 2173 g51839 i0 100 102.422360248447 161 0 100 0 1 161 1474687 1474527 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 16490 298 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
27517971 27517971 PRJNA415856_P_NODE_43063_length_164_cov_1.052174_g42802_i0 PRJNA415856 43063 164 1.052174 1.72556536 Halococcus agarilyticus 1232219 Archaea Archaea 105 1.13e-24   NR WP_049902900.1 1232219 g42802 i0 94.3 0.969512195121951 53 3 97 0 1 159 207 259 WP_049902900.1 phosphate ABC transporter permease PstA [Halococcus agarilyticus] diamond 159 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus agarilyticus
29871093 29871093 PRJNA415856_P_NODE_43191_length_164_cov_0.886957_g42930_i0 PRJNA415856 43191 164 0.886957 1.45460948 root 1 Root_unresolved Root_unresolved 45.1 0.00193   NR WP_004029977.1 2162 g42930 i0 44.4 2.72560975609756 45 25 82.3 0 143 9 151 195 WP_004029977.1 HNH endonuclease [Methanobacterium formicicum] diamond 447 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
29997590 29997590 PRJNA415856_P_NODE_33911_length_168_cov_1.714286_g33650_i0 PRJNA415856 33911 168 1.714286 2.88000048 Methanobrevibacter 2172 Archaea Archaea 97.1 9.82e-22   NR WP_406536942.1 66852 g33650 i0 96.4 14.9464285714286 55 2 98.2 0 1 165 21 75 WP_406536942.1 glycosyltransferase [Methanobrevibacter sp.] diamond 2511 97.8 0.992842535787321 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30043897 30043897 PRJNA415856_P_NODE_28411_length_177_cov_1.507812_g28150_i0 PRJNA415856 28411 177 1.507812 2.66882724 Saliphagus sp. LR7 2282654 Archaea Archaea 79.7 1.12e-15   NR WP_114578608.1 2282654 g28150 i0 71.2 1 59 17 100 0 1 177 164 222 WP_114578608.1 ISH3 family transposase [Saliphagus sp. LR7] diamond 177 79.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Saliphagus Saliphagus sp. LR7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;