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contig_metadata

19 rows where bioproject = "PRJNA415856" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419171 419171 PRJNA415856_P_NODE_15801_length_219_cov_1.058824_g15540_i0 PRJNA415856 15801 219 1.058824 2.31882456 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 272 1.37e-68   NTclustered gi|2874253728|emb|OY969570.1| 412054 g15540 i0 89.189 44.7716894977169 222 18 100 5 1 219 172720 172502 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 9805 272 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9347307 9347307 PRJNA415856_P_NODE_15628_length_220_cov_1.192982_g15367_i0 PRJNA415856 15628 220 1.192982 2.6245604 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 311 2.91e-80   NTclustered gi|2874253978|emb|OY970303.1| 412054 g15367 i0 93.056 296.3 216 9 97 6 8 220 5915218 5915430 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 65186 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10623137 10623137 PRJNA415856_P_NODE_25829_length_182_cov_1.157895_g25568_i0 PRJNA415856 25829 182 1.157895 2.1073689 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 115 1.22e-28   NR HEX5072802.1 2026741 g25568 i0 98.3 0.989010989010989 60 1 98.9 0 2 181 239 298 HEX5072802.1 M20 family metallo-hydrolase [Gemmatimonadaceae bacterium] diamond 180 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
11286831 11286831 PRJNA415856_P_NODE_48509_length_162_cov_1.353982_g48248_i0 PRJNA415856 48509 162 1.353982 2.19345084 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 89.4 3.12e-19   NR MBA2459169.1 2448054 g48248 i0 88.5 3.85185185185185 52 6 96.3 0 2 157 195 246 MBA2459169.1 ammonium transporter [Gemmatimonadales bacterium] diamond 624 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
15721886 15721886 PRJNA415856_P_NODE_19953_length_196_cov_1.027211_g19692_i0 PRJNA415856 19953 196 1.027211 2.01333356 uncultured Gemmatimonadales bacterium HF4000_15H13 723618 Bacteria Bacteria 171 4.49e-38   NTclustered gi|297172678|gb|GU568020.1| 723618 g19692 i0 90.769 169.061224489796 130 8 65 4 68 195 19354 19227 Uncultured Gemmatimonadales bacterium HF4000_15H13 genomic sequence blastn 33136 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium HF4000_15H13
23371579 23371579 PRJNA415856_P_NODE_51799_length_161_cov_0.910714_g51538_i0 PRJNA415856 51799 161 0.910714 1.46624954 Pseudomonadati 3379134 Bacteria Bacteria 91.7 9.44e-22   NR HEY5415140.1 2026741 g51538 i0 83 1.97515527950311 53 9 98.8 0 159 1 46 98 HEY5415140.1 ribosomal protein S18-alanine N-acetyltransferase [Gemmatimonadaceae bacterium] diamond 318 92 0.996739130434783 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
24645600 24645600 PRJNA415856_P_NODE_18360_length_203_cov_2.597403_g18099_i0 PRJNA415856 18360 203 2.597403 5.27272809 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 278 2.68e-70   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g18099 i0 91.584 192.369458128079 202 16 99 1 2 203 1095565 1095365 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 39051 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
24645785 24645785 PRJNA415856_P_NODE_43620_length_164_cov_0.886957_g43359_i0 PRJNA415856 43620 164 0.886957 1.45460948 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 163 6.06e-36   NTclustered gi|2874253978|emb|OY970303.1| 412054 g43359 i0 87.77 0.847560975609756 139 17 85 0 6 144 2193385 2193523 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 139 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26822577 26822577 PRJNA415856_P_NODE_38001_length_166_cov_0.871795_g37740_i0 PRJNA415856 38001 166 0.871795 1.4471797 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 70.1 2.78e-12   NR PYP79602.1 2026742 g37740 i0 91.9 0.668674698795181 37 3 66.9 0 3 113 244 280 PYP79602.1 MAG: amino acid dehydrogenase [Gemmatimonadota bacterium] diamond 111 70.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26902546 26902546 PRJNA415856_P_NODE_50161_length_162_cov_0.902655_g49900_i0 PRJNA415856 50161 162 0.902655 1.4623011 Pseudomonadati 3379134 Bacteria Bacteria 43.9 0.00279   NR HET9453614.1 2026741 g49900 i0 60 1.85185185185185 35 9 55.6 1 137 48 100 134 HET9453614.1 hotdog fold domain-containing protein [Gemmatimonadaceae bacterium] diamond 300 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28117740 28117740 PRJNA415856_P_NODE_34785_length_167_cov_1.635593_g34524_i0 PRJNA415856 34785 167 1.635593 2.73144031 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 101 6.77e-24   NR HKP16651.1 2026741 g34524 i0 86.8 0.952095808383233 53 7 95.2 0 2 160 315 367 HKP16651.1 ankyrin repeat domain-containing protein [Gemmatimonadaceae bacterium] diamond 159 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28243956 28243956 PRJNA415856_P_NODE_44206_length_164_cov_0.886957_g43945_i0 PRJNA415856 44206 164 0.886957 1.45460948 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 55.8 8.5e-8   NR HUQ82535.1 2026741 g43945 i0 64.4 0.823170731707317 45 16 82.3 0 29 163 1 45 HUQ82535.1 ribosomal protein S18-alanine N-acetyltransferase [Gemmatimonadaceae bacterium] diamond 135 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28338904 28338904 PRJNA415856_P_NODE_47746_length_163_cov_0.894737_g47485_i0 PRJNA415856 47746 163 0.894737 1.45842131 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 108 1.14e-25   NR HEX5072002.1 2026741 g47485 i0 98.1 0.993865030674847 54 1 99.4 0 1 162 455 508 HEX5072002.1 protein kinase [Gemmatimonadaceae bacterium] diamond 162 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29254285 29254285 PRJNA415856_P_NODE_27949_length_178_cov_1.209302_g27688_i0 PRJNA415856 27949 178 1.209302 2.15255756 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.8 6.12e-4   NR HEX6966280.1 2026741 g27688 i0 80 0.825842696629214 25 5 42.1 0 2 76 129 153 HEX6966280.1 peptidylprolyl isomerase [Gemmatimonadaceae bacterium] diamond 147 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30897244 30897244 PRJNA415856_P_NODE_48274_length_162_cov_1.672566_g48013_i0 PRJNA415856 48274 162 1.672566 2.70955692 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 96.3 4.65e-22   NR MFL5479803.1 2026741 g48013 i0 81.5 1 54 10 100 0 162 1 124 177 MFL5479803.1 IS110 family transposase [Gemmatimonadaceae bacterium] diamond 162 96.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31339454 31339454 PRJNA415856_P_NODE_36736_length_167_cov_0.864407_g36475_i0 PRJNA415856 36736 167 0.864407 1.44355969 Longimicrobium sp. 2029185 Bacteria Bacteria 41.2 0.013   NR WP_331875366.1 2029185 g36475 i0 55.9 0.610778443113772 34 15 61.1 0 138 37 62 95 WP_331875366.1 hypothetical protein, partial [Longimicrobium sp.] diamond 102 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31529462 31529462 PRJNA415856_P_NODE_50356_length_162_cov_0.902655_g50095_i0 PRJNA415856 50356 162 0.902655 1.4623011 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.2 0.0437   NR MYG82094.1 2026742 g50095 i0 32.6 1.7037037037037 46 31 85.2 0 18 155 349 394 MYG82094.1 TonB-dependent receptor plug domain-containing protein [Gemmatimonadota bacterium] diamond 276 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31655647 31655647 PRJNA415856_P_NODE_53677_length_160_cov_2.657658_g53416_i0 PRJNA415856 53677 160 2.657658 4.2522528 Longimicrobium sp. 2029185 Bacteria Bacteria 85.1 1.42e-17   NR HEY0038634.1 2029185 g53416 i0 84.3 0.95625 51 8 95.6 0 159 7 200 250 HEY0038634.1 hypothetical protein [Longimicrobium sp.] diamond 153 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31845487 31845487 PRJNA415856_P_NODE_38077_length_166_cov_0.871795_g37816_i0 PRJNA415856 38077 166 0.871795 1.4471797 Longimicrobium sp. 2029185 Bacteria Bacteria 103 3.36e-25   NR HEV3050267.1 2029185 g37816 i0 90.9 4.96987951807229 55 5 99.4 0 1 165 183 237 HEV3050267.1 HAMP domain-containing sensor histidine kinase [Longimicrobium sp.] diamond 825 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;