RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA415856" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA415856 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12562364 12562364 PRJNA415856_P_NODE_9090_length_298_cov_1.429719_g8829_i0 PRJNA415856 9090 298 1.429719 4.26056262 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 128 9.439999999999999e-35   NR XP_001014308.1 312017 g8829 i0 58.9 1.91275167785235 95 39 95.6 0 12 296 56 150 XP_001014308.1 eukaryotic translation initiation factor 5A [Tetrahymena thermophila SB210] diamond 570 128 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27328563 27328563 PRJNA415856_P_NODE_27323_length_179_cov_1.330769_g27062_i0 PRJNA415856 27323 179 1.330769 2.38207651 Nyctotherus ovalis 70075 SAR_Eukaryotes SAR_Eukaryotes 58.9 3.03e-8   NR AAX19093.1 70075 g27062 i0 53.6 0.93854748603352 56 25 93.9 1 12 179 67 121 AAX19093.1 eukaryotic release factor 1b [Nyctotherus ovalis] diamond 168 58.9 1 Eukaryota Sar   Ciliophora Armophorea Clevelandellida Nyctotheridae Nyctotherus Nyctotherus ovalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;