RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA415856" and tax_phylum = "Candidatus Absconditibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA415856 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25309734 25309734 PRJNA415856_P_NODE_55260_length_152_cov_2.106796_g54999_i0 PRJNA415856 55260 152 2.106796 3.20232992 Bacteria 2 Bacteria Bacteria 209 6.97e-50   NTclustered gi|563351663|gb|CP006913.1| 1394709 g54999 i0 91.447 118.394736842105 152 13 100 0 1 152 126776 126927 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 17996 209 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
27106988 27106988 PRJNA415856_P_NODE_40782_length_165_cov_0.879310_g40521_i0 PRJNA415856 40782 165 0.87931 1.4508615 candidate division SR1 bacterium 2044938 Bacteria Bacteria 99 1.09e-22   NR MBF0931876.1 2044938 g40521 i0 96.3 0.981818181818182 54 2 98.2 0 4 165 220 273 MBF0931876.1 hypothetical protein [candidate division SR1 bacterium] diamond 162 99 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
29727848 29727848 PRJNA415856_P_NODE_41190_length_165_cov_0.879310_g40929_i0 PRJNA415856 41190 165 0.87931 1.4508615 candidate division SR1 bacterium 2044938 Bacteria Bacteria 67 3.18e-11   NR MBB1556903.1 2044938 g40929 i0 90.9 0.6 33 2 58.2 1 111 16 152 184 MBB1556903.1 hypothetical protein [candidate division SR1 bacterium] diamond 99 67 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
30170223 30170223 PRJNA415856_P_NODE_22832_length_187_cov_1.905797_g22571_i0 PRJNA415856 22832 187 1.905797 3.56384039 candidate division SR1 bacterium 2044938 Bacteria Bacteria 120 7.4e-30   NR MBB1578361.1 2044938 g22571 i0 94.6 1.79679144385027 56 3 89.8 0 3 170 2453 2508 MBB1578361.1 VCBS repeat-containing protein [candidate division SR1 bacterium] diamond 336 120 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;