RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA415856", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA415856 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15111050 15111050 PRJNA415856_P_NODE_15132_length_223_cov_2.747126_g14871_i0 PRJNA415856 15132 223 2.747126 6.12609098 Fervidobacterium 2422 Bacteria Bacteria 412 7.88e-111   NTclustered gi|444439378|ref|NR_074093.1| 2424 g14871 i0 100 110.233183856502 223 0 100 0 1 223 464 686 Fervidobacterium nodosum strain Rt17-B1 16S ribosomal RNA, partial sequence blastn 24582 412 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
15111097 15111097 PRJNA415856_P_NODE_19992_length_195_cov_3.130137_g19731_i0 PRJNA415856 19992 195 3.130137 6.10376715 Fervidobacterium 2422 Bacteria Bacteria 350 5.34e-92   NTclustered gi|444439378|ref|NR_074093.1| 2424 g19731 i0 99.482 109.123076923077 193 0 98 1 1 192 688 880 Fervidobacterium nodosum strain Rt17-B1 16S ribosomal RNA, partial sequence blastn 21279 350 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
27644466 27644466 PRJNA415856_P_NODE_50484_length_162_cov_0.902655_g50223_i0 PRJNA415856 50484 162 0.902655 1.4623011 Thermosipho sp. (in: thermotogales) 1968895 Bacteria Bacteria 62.8 1.04e-9   NR WP_287568808.1 1968895 g50223 i0 54 0.925925925925926 50 21 90.7 2 149 3 451 499 WP_287568808.1 hypothetical protein [Thermosipho sp. (in: thermotogales)] diamond 150 62.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho sp. (in: thermotogales)
28023206 28023206 PRJNA415856_P_NODE_19265_length_199_cov_1.106667_g19004_i0 PRJNA415856 19265 199 1.106667 2.20226733 Thermotoga sp. 28240 Bacteria Bacteria 103 1.16e-24   NR MDK2785653.1 28240 g19004 i0 74.2 1.9748743718593 66 17 99.5 0 1 198 222 287 MDK2785653.1 hypothetical protein [Thermotoga sp.] diamond 393 103 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;