RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA415856", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJNA415856 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5523202 5523202 PRJNA415856_P_NODE_51905_length_161_cov_0.910714_g51644_i0 PRJNA415856 51905 161 0.910714 1.46624954 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 3.5e-26   NR HMN68864.1 2053517 g51644 i0 90.6 2.96273291925466 53 5 98.8 0 2 160 65 117 HMN68864.1 pitrilysin family protein [Bdellovibrionales bacterium] diamond 477 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
9347409 9347409 PRJNA415856_P_NODE_30268_length_174_cov_1.424000_g30007_i0 PRJNA415856 30268 174 1.424 2.47776 Bdellovibrio 958 Bacteria Bacteria 114 4.17e-29   NR WP_063244947.1 959 g30007 i0 91.4 4 58 5 100 0 174 1 41 98 WP_063244947.1 polyprenyl synthetase family protein [Bdellovibrio bacteriovorus] diamond 696 115 0.991304347826087 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
13836897 13836897 PRJNA415856_P_NODE_25771_length_182_cov_1.285714_g25510_i0 PRJNA415856 25771 182 1.285714 2.33999948 Pseudobdellovibrio 2862745 Bacteria Bacteria 315 1.79e-81   NTclustered gi|507148233|ref|NR_103040.1| 453816 g25510 i0 97.802 229.071428571429 182 4 100 0 1 182 2093 2274 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 41691 315 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
18270988 18270988 PRJNA415856_P_NODE_39815_length_165_cov_1.758621_g39554_i0 PRJNA415856 39815 165 1.758621 2.90172465 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 305 9.59e-79   NTclustered gi|758818755|emb|HF912306.1| 239744 g39554 i0 100 113.993939393939 165 0 100 0 1 165 515 351 Uncultured Bdellovibrio sp. partial 16S rRNA gene, clone AcqueII_11 blastn 18809 305 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
27043962 27043962 PRJNA415856_P_NODE_32542_length_170_cov_1.685950_g32281_i0 PRJNA415856 32542 170 1.68595 2.866115 Oligoflexia bacterium 2599941 Bacteria Bacteria 61.2 4.09e-9   NR MCO5143639.1 2599941 g32281 i0 54.5 0.970588235294118 55 25 97.1 0 3 167 67 121 MCO5143639.1 ABC transporter substrate-binding protein [Oligoflexia bacterium] diamond 165 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
28513370 28513370 PRJNA415856_P_NODE_22027_length_189_cov_1.335714_g21766_i0 PRJNA415856 22027 189 1.335714 2.52449946 Bdellovibrio 958 Bacteria Bacteria 114 9.65e-29   NR WP_415064305.1 28201 g21766 i0 83.9 6.82539682539683 62 10 98.4 0 188 3 211 272 WP_415064305.1 class I SAM-dependent methyltransferase [Bdellovibrio sp.] diamond 1290 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29776210 29776210 PRJNA415856_P_NODE_52971_length_161_cov_0.910714_g52710_i0 PRJNA415856 52971 161 0.910714 1.46624954 Bdellovibrio 958 Bacteria Bacteria 100 6.72e-24   NR WP_328517233.1 2972972 g52710 i0 86.5 3.8944099378882 52 7 96.9 0 158 3 42 93 WP_328517233.1 alpha/beta hydrolase [Bdellovibrio svalbardensis] diamond 627 100 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio svalbardensis
30423487 30423487 PRJNA415856_P_NODE_39433_length_166_cov_0.871795_g39172_i0 PRJNA415856 39433 166 0.871795 1.4471797 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 83.2 7.08e-17   NR HEX4924816.1 2053517 g39172 i0 66.7 0.975903614457831 54 18 97.6 0 3 164 817 870 HEX4924816.1 zinc-dependent metalloprotease [Bdellovibrionales bacterium] diamond 162 83.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30865390 30865390 PRJNA415856_P_NODE_42174_length_165_cov_0.879310_g41913_i0 PRJNA415856 42174 165 0.87931 1.4508615 Bdellovibrio 958 Bacteria Bacteria 41.6 0.0323   NR WP_374078522.1 958 g41913 i0 58.6 0.527272727272727 29 12 52.7 0 163 77 42 70 WP_374078522.1 MULTISPECIES: S1 family peptidase [Bdellovibrio] diamond 87 41.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
30991963 30991963 PRJNA415856_P_NODE_43714_length_164_cov_0.886957_g43453_i0 PRJNA415856 43714 164 0.886957 1.45460948 Oligoflexus sp. 1971216 Bacteria Bacteria 54.3 1.02e-6   NR MBC7529947.1 1971216 g43453 i0 95.8 0.439024390243902 24 1 43.9 0 163 92 313 336 MBC7529947.1 ligase-associated DNA damage response exonuclease [Oligoflexus sp.] diamond 72 54.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
32825236 32825236 PRJNA415856_P_NODE_27260_length_179_cov_1.430769_g26999_i0 PRJNA415856 27260 179 1.430769 2.56107651 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94.7 4.019999999999999e-23   NR MBX3023249.1 2053517 g26999 i0 76.3 1.9608938547486 59 14 98.9 0 179 3 40 98 MBX3023249.1 methylmalonyl-CoA epimerase [Bdellovibrionales bacterium] diamond 351 94.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32888010 32888010 PRJNA415856_P_NODE_52680_length_161_cov_0.910714_g52419_i0 PRJNA415856 52680 161 0.910714 1.46624954 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 99 2.76e-24   NR MBX3021525.1 2053517 g52419 i0 88.7 0.987577639751553 53 6 98.8 0 2 160 64 116 MBX3021525.1 biopolymer transporter ExbD [Bdellovibrionales bacterium] diamond 159 99 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;