RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415856", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA415856 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27106986 27106986 PRJNA415856_P_NODE_38022_length_166_cov_0.871795_g37761_i0 PRJNA415856 38022 166 0.871795 1.4471797 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 91.3 6.78e-20   NR CAA9242056.1 157466 g37761 i0 77.8 0.975903614457831 54 12 97.6 0 3 164 254 307 CAA9242056.1 Lipopolysaccharide biosynthesis protein RffA [uncultured Armatimonadetes bacterium] diamond 162 91.3 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
28528508 28528508 PRJNA415856_P_NODE_34547_length_167_cov_1.855932_g34286_i0 PRJNA415856 34547 167 1.855932 3.09940644 Armatimonadota bacterium 2033014 Bacteria Bacteria 42.7 0.0136   NR NCP28680.1 2033014 g34286 i0 44.9 1.76047904191617 49 21 84.4 2 22 162 89 133 NCP28680.1 right-handed parallel beta-helix repeat-containing protein [Armatimonadota bacterium] diamond 294 42.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31908884 31908884 PRJNA415856_P_NODE_22577_length_188_cov_1.309353_g22316_i0 PRJNA415856 22577 188 1.309353 2.46158364 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 63.5 8.08e-10   NR MCS6776416.1 2739509 g22316 i0 78 0.654255319148936 41 9 65.4 0 128 6 1 41 MCS6776416.1 DUF1501 domain-containing protein [Chthonomonadaceae bacterium] diamond 123 63.5 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;