RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA415856", tax_clade = "core chlorophytes" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA415856 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4246273 4246273 PRJNA415856_P_NODE_20344_length_194_cov_1.406897_g20083_i0 PRJNA415856 20344 194 1.406897 2.72938018 Monoraphidium neglectum 145388 Plants Plants 62.1 2.78e-5   NTclustered gi|926775519|ref|XM_014040780.1| 145388 g20083 i0 90 0.257731958762887 50 2 26 2 5 54 1544 1590 Monoraphidium neglectum hypothetical protein mRNA blastn 50 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
13173117 13173117 PRJNA415856_P_NODE_37691_length_166_cov_0.871795_g37430_i0 PRJNA415856 37691 166 0.871795 1.4471797 Diplosphaera sundellii 3135960 Plants Plants 111 2.26e-20   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g37430 i0 94.595 1.7710843373494 74 0 100 4 1 70 63912 63985 Diplosphaera sundellii mitochondrion, complete genome blastn 294 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii
25309729 25309729 PRJNA415856_P_NODE_54240_length_157_cov_2.509259_g53979_i0 PRJNA415856 54240 157 2.509259 3.93953663 Trebouxia 13786 Plants Plants 285 1.17e-72   NTclustered gi|1273623725|gb|KY033354.1| 285713 g53979 i0 99.363 99.4713375796178 157 1 100 0 1 157 6572 6416 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15617 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
28418846 28418846 PRJNA415856_P_NODE_17386_length_209_cov_1.087500_g17125_i0 PRJNA415856 17386 209 1.0875 2.272875 Chlorophyta 3041 Plants Plants 97.8 5.31e-22   NR RMZ56444.1 3075 g17125 i0 71 5.91387559808612 69 20 99 0 1 207 120 188 RMZ56444.1 hypothetical protein APUTEX25_004667, partial [Auxenochlorella protothecoides] diamond 1236 98.2 0.995926680244399 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;