RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415856", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA415856 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20820884 20820884 PRJNA415856_P_NODE_13717_length_234_cov_2.205405_g13456_i0 PRJNA415856 13717 234 2.205405 5.1606477 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 158 4.32e-34   NTclustered gi|219118139|ref|XM_002179815.1| 556484 g13456 i0 88.976 81.9017094017094 127 14 54 0 1 127 251 377 Phaeodactylum tricornutum CCAP 1055/1 ubiquitin extension protein 3 (UBI3), mRNA blastn 19165 158 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
21485240 21485240 PRJNA415856_P_NODE_42017_length_165_cov_0.879310_g41756_i0 PRJNA415856 42017 165 0.87931 1.4508615 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 294 2.08e-75   NTclustered gi|2127884593|ref|NC_058877.1| 83372 g41756 i0 98.795 199.2 166 1 100 1 1 165 14322 14157 Thalassiosira nordenskioeldii isolate CNS00052 chloroplast, complete genome blastn 32868 294 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira nordenskioeldii
32368744 32368744 PRJNA415856_P_NODE_42539_length_164_cov_1.773913_g42278_i0 PRJNA415856 42539 164 1.773913 2.90921732 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.4 5.04e-6   NR GFH56056.1 426638 g42278 i0 71.9 3.53048780487805 32 9 58.5 0 102 7 119 150 GFH56056.1 hypothetical protein CTEN210_12532 [Chaetoceros tenuissimus] diamond 579 52.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;