RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415856", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA415856 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4246392 4246392 PRJNA415856_P_NODE_34584_length_167_cov_1.728814_g34323_i0 PRJNA415856 34584 167 1.728814 2.88711938 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 93.5 8.25e-15   NTclustered gi|2787671673|ref|XM_067327630.1| 310047 g34323 i0 80.328 1.51497005988024 122 24 73 0 45 166 232 353 Cryptosporidium bovis ribosomal S23 (FG379_002027), partial mRNA blastn 253 93.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
19545071 19545071 PRJNA415856_P_NODE_23856_length_185_cov_4.183824_g23595_i0 PRJNA415856 23856 185 4.183824 7.7400744 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.016   NTclustered gi|1145261764|ref|XM_012908954.2| 5854 g23595 i0 100 0.151351351351351 28 0 15 0 8 35 2499 2526 Plasmodium reichenowi DEAD/DEAH box ATP-dependent RNA helicase, putative partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
20820871 20820871 PRJNA415856_P_NODE_12657_length_245_cov_0.984694_g12396_i0 PRJNA415856 12657 245 0.984694 2.4125003 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 364 2.5e-96   NTclustered gi|820695469|tpe|LN714488.1| 572307 g12396 i0 93.802 53.2326530612245 242 15 100 0 1 242 116099 116340 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 13042 364 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;