RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA415856", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA415856 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26758936 26758936 PRJNA415856_P_NODE_18561_length_202_cov_2.405229_g18300_i0 PRJNA415856 18561 202 2.405229 4.85856258 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 85.9 2.35e-18   NR NLH61015.1 2049428 g18300 i0 59.7 0.995049504950495 67 27 99.5 0 201 1 15 81 NLH61015.1 site-specific DNA-methyltransferase [Ignavibacteriales bacterium] diamond 201 85.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
28023209 28023209 PRJNA415856_P_NODE_28625_length_177_cov_0.796875_g28364_i0 PRJNA415856 28625 177 0.796875 1.41046875 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 42.4 0.0216   NR RPI02837.1 2026749 g28364 i0 50 0.644067796610169 38 18 62.7 1 7 117 216 253 RPI02837.1 MAG: glycosyltransferase [Ignavibacteriota bacterium] diamond 114 42.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
29601506 29601506 PRJNA415856_P_NODE_11610_length_257_cov_4.024038_g11349_i0 PRJNA415856 11610 257 4.024038 10.34177766 Ignavibacteria bacterium 2053306 Bacteria Bacteria 61.6 6.13e-9   NR NLO19717.1 2053306 g11349 i0 67.6 0.793774319066148 34 11 39.7 0 154 255 5 38 NLO19717.1 site-specific DNA-methyltransferase [Ignavibacteria bacterium] diamond 204 61.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29949267 29949267 PRJNA415856_P_NODE_31531_length_172_cov_1.300813_g31270_i0 PRJNA415856 31531 172 1.300813 2.23739836 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 69.7 4.46e-12   NR MCX6173831.1 2049428 g31270 i0 59.6 1.98837209302326 57 23 99.4 0 2 172 10 66 MCX6173831.1 T9SS type A sorting domain-containing protein [Ignavibacteriales bacterium] diamond 342 69.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;