RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415856", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA415856 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28749342 28749342 PRJNA415856_P_NODE_30847_length_173_cov_1.395161_g30586_i0 PRJNA415856 30847 173 1.395161 2.41362853 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 97.8 5.81e-22   NR RAL56479.1 1914866 g30586 i0 96.5 0.988439306358382 57 2 98.8 0 3 173 377 433 RAL56479.1 hypothetical protein BLM37_03125 [Candidatus Gracilibacteria bacterium GN02-873] diamond 171 97.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873
29744504 29744504 PRJNA415856_P_NODE_30750_length_173_cov_1.588710_g30489_i0 PRJNA415856 30750 173 1.58871 2.7484683 Bacteria 2 Bacteria Bacteria 86.7 4.81e-18   NR RKW20009.1 2044595 g30489 i0 97.7 2.23699421965318 43 1 74.6 0 1 129 519 561 RKW20009.1 MAG: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Candidatus Altimarinota bacterium] diamond 387 86.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31750576 31750576 PRJNA415856_P_NODE_45237_length_163_cov_2.043860_g44976_i0 PRJNA415856 45237 163 2.04386 3.3314918 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 52.8 3.48e-6   NR RAL56531.1 1914866 g44976 i0 92.6 0.496932515337423 27 2 49.7 0 122 42 1 27 RAL56531.1 hypothetical protein BLM37_00540 [Candidatus Gracilibacteria bacterium GN02-873] diamond 81 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;