RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415636" and tax_superkingdom = "Viruses"

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tax_phylum 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415636 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10622994 10622994 PRJNA415636_S_NODE_5869_length_213_cov_5.012048_g5822_i0 PRJNA415636 5869 213 5.012048 10.67566224 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.005   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g5822 i0 100 0.267605633802817 29 0 14 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
11897956 11897956 PRJNA415636_S_NODE_7070_length_189_cov_162.760563_g7023_i0 PRJNA415636 7070 189 162.760563 307.61746407 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g7023 i0 96.97 0.767195767195767 33 0 17 1 157 189 44 13 Carnation latent virus isolate KL, complete genome blastn 145 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
20820827 20820827 PRJNA415636_S_NODE_1037_length_403_cov_3.039326_g990_i0 PRJNA415636 1037 403 3.039326 12.24848378 Carlavirus latensdianthi 3427766 Viruses Viruses 58.4 8.31e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g990 i0 89.13 0.533498759305211 46 5 11 0 358 403 58 13 Carnation latent virus isolate KL, complete genome blastn 215 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;