RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA415636" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415636 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5522889 5522889 PRJNA415636_S_NODE_4505_length_237_cov_4.152632_g4458_i0 PRJNA415636 4505 237 4.152632 9.84173784 Polychytrium aggregatum 110093 Fungi Fungi 89.8 1.62e-13   NTclustered gi|2432155304|ref|XM_053111518.1| 110093 g4458 i0 86.42 0.915611814345992 81 11 34 0 13 93 226 306 Polychytrium aggregatum ribosomal L27e protein family-domain-containing protein (BJ171DRAFT_510919), mRNA blastn 217 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
32478643 32478643 PRJNA415636_S_NODE_3599_length_259_cov_2.858491_g3552_i0 PRJNA415636 3599 259 2.858491 7.40349169 Dinochytrium kinnereticum 1774096 Fungi Fungi 68.6 1.52e-11   NR KAJ3220079.1 1774096 g3552 i0 54.2 2.74517374517375 59 27 68.3 0 259 83 190 248 KAJ3220079.1 40S ribosomal protein S21 [Dinochytrium kinnereticum] diamond 711 68.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Dinochytrium Dinochytrium kinnereticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;