RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415636", tax_phylum = "Actinomycetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415636 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13172877 13172877 PRJNA415636_S_NODE_1071_length_400_cov_3.660057_g1024_i0 PRJNA415636 1071 400 3.660057 14.640228 Paenarthrobacter sp. S56 3138179 Bacteria Bacteria 67.6 1.37e-6   NTclustered gi|2734993624|gb|CP152470.1| 3138179 g1024 i0 97.436 0.2975 39 1 10 0 204 242 3312890 3312928 Paenarthrobacter sp. S56 chromosome, complete genome blastn 119 67.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter sp. S56
20820834 20820834 PRJNA415636_S_NODE_4197_length_244_cov_1.258883_g4150_i0 PRJNA415636 4197 244 1.258883 3.07167452 Corynebacterium sp. 102791.4 3104612 Bacteria Bacteria 385 1.91e-102   NTclustered gi|2627812303|gb|OR912476.1| 3104612 g4150 i0 95.082 335.463114754098 244 12 100 0 1 244 1164 921 Corynebacterium sp. 102791.4 23S ribosomal RNA gene, partial sequence blastn 81853 385 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. 102791.4
27612797 27612797 PRJNA415636_S_NODE_5384_length_221_cov_2.086207_g5337_i0 PRJNA415636 5384 221 2.086207 4.61051747 Actinomycetota bacterium 2900548 Bacteria Bacteria 53.5 1.91e-6   NR MEY2477645.1 2900548 g5337 i0 42.3 1.91402714932127 71 41 96.4 0 214 2 78 148 MEY2477645.1 hypothetical protein [Actinomycetota bacterium] diamond 423 53.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;