RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415636" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA415636 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2969822 2969822 PRJNA415636_S_NODE_4523_length_237_cov_2.147368_g4476_i0 PRJNA415636 4523 237 2.147368 5.08926216 Chlamydomonas sp. HS-5 108458 Plants Plants 204 5.549999999999999e-48   NTclustered gi|6440927|dbj|AU066544.1| 108458 g4476 i0 84.018 13.0675105485232 219 27 91 7 3 217 527 741 Chlamydomonas sp. HS-5 mRNA for 60S ribosomal protein L2, NaCl+paraquat inducible, complete cds, clone:M30 blastn 3097 204 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. HS-5
15721782 15721782 PRJNA415636_S_NODE_5633_length_217_cov_3.700000_g5586_i0 PRJNA415636 5633 217 3.7 8.029 Trebouxia sp. SL0000003 3350044 Plants Plants 110 1.12e-19   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g5586 i0 94.366 0.631336405529954 71 4 33 0 112 182 1022551 1022621 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 137 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
27770746 27770746 PRJNA415636_S_NODE_5204_length_224_cov_3.169492_g5157_i0 PRJNA415636 5204 224 3.169492 7.09966208 [Myrmecia] bisecta 41462 Plants Plants 70.1 6.67e-12   NR KAK9817216.1 41462 g5157 i0 55.7 0.9375 70 30 92.4 1 219 13 188 257 KAK9817216.1 hypothetical protein WJX72_011192 [[Myrmecia] bisecta] diamond 210 70.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;