RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA415636", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA415636 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31577656 31577656 PRJNA415636_S_NODE_3256_length_270_cov_1.412556_g3209_i0 PRJNA415636 3256 270 1.412556 3.8139012 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 70.5 9.13e-12   NR XP_008619232.1 1156394 g3209 i0 57.7 7.81111111111111 71 30 78.9 0 1 213 572 642 XP_008619232.1 hypothetical protein SDRG_14852 [Saprolegnia diclina VS20] diamond 2109 70.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
32573563 32573563 PRJNA415636_S_NODE_5519_length_219_cov_2.046512_g5472_i0 PRJNA415636 5519 219 2.046512 4.48186128 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 47.8 4.79e-4   NR CAH0481106.1 622444 g5472 i0 34.8 1.58904109589041 66 42 89 1 213 19 46 111 CAH0481106.1 unnamed protein product [Peronospora belbahrii] diamond 348 47.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;