RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA415636", tax_clade = "PVC group" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_kingdom 1

  • Pseudomonadati · 2 ✖

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA415636 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26980584 26980584 PRJNA415636_S_NODE_6242_length_208_cov_4.950311_g6195_i0 PRJNA415636 6242 208 4.950311 10.29664688 Horticoccus luteus 2862869 Bacteria Bacteria 42.4 0.0279   NR WP_220165494.1 2862869 g6195 i0 41.1 0.807692307692308 56 28 73.6 1 19 171 55 110 WP_220165494.1 ThuA domain-containing protein [Horticoccus luteus] diamond 168 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
30201701 30201701 PRJNA415636_S_NODE_6132_length_210_cov_1.484663_g6085_i0 PRJNA415636 6132 210 1.484663 3.1177923 Planctomycetota bacterium 2026780 Bacteria Bacteria 62.8 2.03e-9   NR MBI4878578.1 2026780 g6085 i0 44.3 0.871428571428571 61 34 87.1 0 184 2 348 408 MBI4878578.1 hypothetical protein [Planctomycetota bacterium] diamond 183 62.8 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;