RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA415636", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA415636 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15721780 15721780 PRJNA415636_S_NODE_5173_length_225_cov_1.404494_g5126_i0 PRJNA415636 5173 225 1.404494 3.1601115 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.02   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g5126 i0 100 0.124444444444444 28 0 12 0 69 96 24948674 24948701 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
31592751 31592751 PRJNA415636_S_NODE_6416_length_205_cov_2.525316_g6369_i0 PRJNA415636 6416 205 2.525316 5.1768978 Dreissena polymorpha 45954 Mollusca Mollusca 61.2 6.76e-9   NR XP_052263433.1 45954 g6369 i0 49.1 0.775609756097561 53 27 77.6 0 1 159 364 416 XP_052263433.1 lysine-specific demethylase 8-like isoform X2 [Dreissena polymorpha] diamond 159 61.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
32288950 32288950 PRJNA415636_S_NODE_3139_length_273_cov_6.300885_g3092_i0 PRJNA415636 3139 273 6.300885 17.20141605 Haliotis asinina 109174 Mollusca Mollusca 43.9 0.0196   NR XP_067657806.1 109174 g3092 i0 35.4 1.40659340659341 65 36 70.3 2 241 50 144 203 XP_067657806.1 uncharacterized protein [Haliotis asinina] diamond 384 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;