RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA415636" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA415636 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
419113 419113 PRJNA415636_S_NODE_5501_length_219_cov_3.203488_g5454_i0 PRJNA415636 5501 219 3.203488 7.01563872 Heterostelium album 2086695 Evosea other_Eukaryota 169 1.84e-37   NTclustered gi|1160571874|ref|XM_020575431.1| 670386 g5454 i0 87.586 25.6666666666667 145 18 66 0 18 162 106 250 Polysphondylium pallidum PN500 S60 ribosomal protein L36a (rpl36a), partial mRNA blastn 5621 169 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
22095526 22095526 PRJNA415636_S_NODE_1858_length_332_cov_1.905263_g1811_i0 PRJNA415636 1858 332 1.905263 6.32547316 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 174 1.17e-51   NR XP_004368290.1 1257118 g1811 i0 89.8 3.18072289156627 88 9 79.5 0 330 67 220 307 XP_004368290.1 Serine/threonine protein phosphatase, putative [Acanthamoeba castellanii str. Neff] diamond 1056 174 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27959923 27959923 PRJNA415636_S_NODE_1245_length_381_cov_5.236527_g1198_i0 PRJNA415636 1245 381 5.236527 19.95116787 Heterostelium album PN5 2086695 Evosea other_Eukaryota 85.1 5.11e-17   NR XP_020434654.1 670386 g1198 i0 42.2 2.10236220472441 90 52 70.9 0 38 307 83 172 XP_020434654.1 slowmo family protein [Heterostelium album PN500] diamond 801 85.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31149376 31149376 PRJNA415636_S_NODE_4195_length_244_cov_1.472081_g4148_i0 PRJNA415636 4195 244 1.472081 3.59187764 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 44.7 0.00796   NR KYR00583.1 361077 g4148 i0 64.3 1.47540983606557 28 10 34.4 0 217 134 375 402 KYR00583.1 IPT/TIG domain-containing protein [Tieghemostelium lacteum] diamond 360 44.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;