contig_metadata
12 rows where bioproject = "PRJNA414225", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5522693 | 5522693 | PRJNA414225_P_NODE_35765_length_174_cov_2.464000_g35678_i0 | PRJNA414225 | 35765 | 174 | 2.464 | 4.28736 | Pseudobdellovibrionaceae bacterium | 2026715 | Bacteria | Bacteria | 195 | 2.3e-45 | NTclustered | gi|2258818259|gb|CP060220.1| | 2026715 | g35678 | i0 | 91.489 | 87.051724137931 | 141 | 12 | 81 | 0 | 33 | 173 | 3251641 | 3251781 | MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome | blastn | 15147 | 195 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 19544690 | 19544690 | PRJNA414225_P_NODE_1616_length_334_cov_1.729825_g1529_i0 | PRJNA414225 | 1616 | 334 | 1.729825 | 5.7776155 | Pseudobdellovibrionaceae bacterium | 2026715 | Bacteria | Bacteria | 300 | 1.02e-76 | NTclustered | gi|2258818259|gb|CP060220.1| | 2026715 | g1529 | i0 | 87.597 | 18.1377245508982 | 258 | 32 | 77 | 0 | 43 | 300 | 3251523 | 3251266 | MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome | blastn | 6058 | 300 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 20820585 | 20820585 | PRJNA414225_P_NODE_23317_length_184_cov_2.422222_g23230_i0 | PRJNA414225 | 23317 | 184 | 2.422222 | 4.45688848 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 215 | 1.89e-51 | NTclustered | gi|2893356067|emb|OZ220490.1| | 2053517 | g23230 | i0 | 89.881 | 35.8858695652174 | 168 | 15 | 91 | 2 | 2 | 169 | 718526 | 718691 | MAG: Bdellovibrionales bacterium isolate a27d8a8e-867a-4b05-bccb-c0e2e07202d2 genome assembly, chromosome: 1 | blastn | 6603 | 215 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 22760049 | 22760049 | PRJNA414225_P_NODE_15238_length_192_cov_1.251748_g15151_i0 | PRJNA414225 | 15238 | 192 | 1.251748 | 2.40335616 | Bdellovibrio | 958 | Bacteria | Bacteria | 182 | 2.02e-41 | NTclustered | gi|2800948966|gb|CP168973.1| | 959 | g15151 | i0 | 94.167 | 272.427083333333 | 120 | 5 | 69 | 2 | 15 | 133 | 1676501 | 1676619 | Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome | blastn | 52306 | 183 | 0.994535519125683 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 27739294 | 27739294 | PRJNA414225_P_NODE_32664_length_177_cov_1.562500_g32577_i0 | PRJNA414225 | 32664 | 177 | 1.5625 | 2.765625 | Oligoflexus sp. | 1971216 | Bacteria | Bacteria | 75.5 | 3.07e-14 | NR | MBC7662034.1 | 1971216 | g32577 | i0 | 92.3 | 1.32203389830508 | 39 | 3 | 66.1 | 0 | 3 | 119 | 299 | 337 | MBC7662034.1 hypothetical protein [Oligoflexus sp.] | diamond | 234 | 75.5 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | Oligoflexaceae | Oligoflexus | Oligoflexus sp. | ||
| 27818911 | 27818911 | PRJNA414225_P_NODE_69884_length_164_cov_1.330435_g69797_i0 | PRJNA414225 | 69884 | 164 | 1.330435 | 2.1819134 | Bdellovibrio | 958 | Bacteria | Bacteria | 105 | 7.39e-25 | NR | WP_374076363.1 | 959 | g69797 | i0 | 90.7 | 1.97560975609756 | 54 | 5 | 98.8 | 0 | 2 | 163 | 596 | 649 | WP_374076363.1 RHS repeat-associated core domain-containing protein [Bdellovibrio bacteriovorus] | diamond | 324 | 105 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 29507002 | 29507002 | PRJNA414225_P_NODE_87630_length_162_cov_0.902655_g87543_i0 | PRJNA414225 | 87630 | 162 | 0.902655 | 1.4623011 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 68.2 | 7.97e-12 | NR | MCB0403216.1 | 2053517 | g87543 | i0 | 58.5 | 1.96296296296296 | 53 | 22 | 98.1 | 0 | 4 | 162 | 212 | 264 | MCB0403216.1 tetratricopeptide repeat protein [Bdellovibrionales bacterium] | diamond | 318 | 68.2 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 30960300 | 30960300 | PRJNA414225_P_NODE_57994_length_166_cov_0.871795_g57907_i0 | PRJNA414225 | 57994 | 166 | 0.871795 | 1.4471797 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 69.3 | 3.25e-12 | NR | MES2854864.1 | 3034175 | g57907 | i0 | 63.5 | 0.939759036144578 | 52 | 19 | 94 | 0 | 158 | 3 | 1 | 52 | MES2854864.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Bdellovibrionota bacterium] | diamond | 156 | 69.3 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 31845470 | 31845470 | PRJNA414225_P_NODE_20517_length_187_cov_1.478261_g20430_i0 | PRJNA414225 | 20517 | 187 | 1.478261 | 2.76434807 | Bdellovibrio | 958 | Bacteria | Bacteria | 52.8 | 4.94e-6 | NR | WP_284604157.1 | 958 | g20430 | i0 | 55.8 | 2.45454545454545 | 52 | 22 | 81.8 | 1 | 155 | 3 | 2 | 53 | WP_284604157.1 MULTISPECIES: translocation protein TolB [Bdellovibrio] | diamond | 459 | 52.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | |||
| 32193725 | 32193725 | PRJNA414225_P_NODE_20118_length_187_cov_1.478261_g20031_i0 | PRJNA414225 | 20118 | 187 | 1.478261 | 2.76434807 | Bdellovibrio svalbardensis | 2972972 | Bacteria | Bacteria | 95.9 | 1.9e-23 | NR | WP_277576925.1 | 2972972 | g20031 | i0 | 70.5 | 0.978609625668449 | 61 | 18 | 97.9 | 0 | 185 | 3 | 42 | 102 | WP_277576925.1 hypothetical protein [Bdellovibrio svalbardensis] | diamond | 183 | 95.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio svalbardensis | ||
| 32193727 | 32193727 | PRJNA414225_P_NODE_52278_length_167_cov_0.864407_g52191_i0 | PRJNA414225 | 52278 | 167 | 0.864407 | 1.44355969 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 95.5 | 4.43e-22 | NR | WP_262553173.1 | 959 | g52191 | i0 | 92.6 | 2.91017964071856 | 54 | 4 | 97 | 0 | 2 | 163 | 50 | 103 | WP_262553173.1 UbiA family prenyltransferase [Bdellovibrio bacteriovorus] | diamond | 486 | 95.5 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 32636038 | 32636038 | PRJNA414225_P_NODE_22140_length_185_cov_3.522059_g22053_i0 | PRJNA414225 | 22140 | 185 | 3.522059 | 6.51580915 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 102 | 4.39e-24 | NR | NQZ02179.1 | 2053517 | g22053 | i0 | 86.2 | 1.92972972972973 | 58 | 8 | 94.1 | 0 | 176 | 3 | 255 | 312 | NQZ02179.1 Holliday junction branch migration DNA helicase RuvB [Bdellovibrionales bacterium] | diamond | 357 | 102 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;