RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA414225", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA414225 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28955643 28955643 PRJNA414225_P_NODE_69448_length_164_cov_1.773913_g69361_i0 PRJNA414225 69448 164 1.773913 2.90921732 Eukaryota 2759 Plants Plants 62.4 1.48e-9   NR KAK2076092.1 3111 g69361 i0 84.8 5.43292682926829 33 5 60.4 0 164 66 758 790 KAK2076092.1 hypothetical protein QBZ16_001428 [Prototheca wickerhamii] diamond 891 62.8 0.993630573248408 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
29696151 29696151 PRJNA414225_P_NODE_23530_length_184_cov_1.511111_g23443_i0 PRJNA414225 23530 184 1.511111 2.78044424 Coccomyxa viridis 1274662 Plants Plants 50.4 3.26e-5   NR CAL5227315.1 1274662 g23443 i0 88 0.96195652173913 25 3 40.8 0 110 184 423 447 CAL5227315.1 g10253 [Coccomyxa viridis] diamond 177 50.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;