RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA414225" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA414225 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8736115 8736115 PRJNA414225_P_NODE_90047_length_160_cov_2.306306_g89960_i0 PRJNA414225 90047 160 2.306306 3.6900896 Fusobacterium 848 Bacteria Bacteria 219 1.2399999999999999e-52   NTclustered gi|2705042081|gb|CP085192.1| 856 g89960 i0 91.304 388.66875 161 13 100 1 1 160 157325 157485 Fusobacterium varium strain SB069 chromosome blastn 62187 219 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
9347145 9347145 PRJNA414225_P_NODE_85388_length_162_cov_0.902655_g85301_i0 PRJNA414225 85388 162 0.902655 1.4623011 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 248 1.6e-61   NTclustered gi|922689899|gb|CP012410.1| 712357 g85301 i0 94.41 73.8271604938272 161 9 99 0 2 162 52826 52986 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 11960 248 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
11897811 11897811 PRJNA414225_P_NODE_62110_length_165_cov_1.758621_g62023_i0 PRJNA414225 62110 165 1.758621 2.90172465 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 305 9.59e-79   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g62023 i0 100 99.8181818181818 165 0 100 0 1 165 703394 703230 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 16470 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
29475219 29475219 PRJNA414225_P_NODE_89730_length_162_cov_0.858407_g89643_i0 PRJNA414225 89730 162 0.858407 1.39061934 Leptotrichia hofstadii 157688 Bacteria Bacteria 92.4 5.17e-22   NR WP_006803455.1 157688 g89643 i0 98.1 1 54 1 100 0 162 1 19 72 WP_006803455.1 F0F1 ATP synthase subunit B [Leptotrichia hofstadii] diamond 162 92.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;