RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA414225", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA414225 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2358577 2358577 PRJNA414225_P_NODE_33242_length_176_cov_1.622047_g33155_i0 PRJNA414225 33242 176 1.622047 2.85480272 Endogonaceae 4870 Fungi Fungi 76.8 8.81e-10   NTclustered gi|82398547|gb|DQ273811.1| 4872 g33155 i0 100 22.8068181818182 41 0 23 0 136 176 2111 2151 Endogone pisiformis isolate AFTOL-ID 539 28S ribosomal RNA gene, partial sequence blastn 4014 76.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Endogonomycetes Endogonales Endogonaceae Endogone Endogone pisiformis
16385455 16385455 PRJNA414225_P_NODE_13153_length_197_cov_9.979730_g13066_i0 PRJNA414225 13153 197 9.97973 19.6600681 Fungi 4751 Fungi Fungi 363 6.939999999999998e-96   NTclustered gi|658131632|emb|HF968958.1| 4874 g13066 i0 100 143.233502538071 196 0 99 0 1 196 1999 2194 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 28217 363 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;