RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA414036" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA414036 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1693676 1693676 PRJNA414036_P_NODE_78682_length_165_cov_2.423077_g76943_i0 PRJNA414036 78682 165 2.423077 3.99807705 Staphylothermus marinus 2280 Archaea Archaea 52.8 0.014   NTclustered gi|126013736|gb|CP000575.1| 399550 g76943 i0 100 0.16969696969697 28 0 17 0 25 52 416759 416786 Staphylothermus marinus F1, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus
2969404 2969404 PRJNA414036_P_NODE_21483_length_326_cov_4.501718_g19755_i0 PRJNA414036 21483 326 4.501718 14.67560068 uncultured Methanobacterium sp. 176306 Archaea Archaea 63.9 1.42e-5   NTclustered gi|2621703503|emb|OY762552.1| 176306 g19755 i0 88.462 22.941717791411 52 6 16 0 24 75 1858036 1857985 MAG: uncultured Methanobacterium sp. isolate 3f2017ab-9e69-417f-80a5-32741c1572f8 genome assembly, chromosome: 1 blastn 7479 63.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
4245745 4245745 PRJNA414036_P_NODE_19364_length_342_cov_8.586319_g17641_i0 PRJNA414036 19364 342 8.586319 29.36521098 uncultured archaeon 115547 Archaea Archaea 436 7.639999999999999e-118   NTclustered gi|1008290997|gb|KU656488.1| 115547 g17641 i0 89.82 102.710526315789 334 25 96 7 6 333 31 361 Uncultured archaeon clone OTU_617 16S ribosomal RNA gene, partial sequence blastn 35127 436 1 Archaea               uncultured archaeon
4245909 4245909 PRJNA414036_P_NODE_80264_length_162_cov_4.204724_g78525_i0 PRJNA414036 80264 162 4.204724 6.81165288 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 52.8 0.013   NTclustered gi|2874253955|emb|OY970280.1| 2026714 g78525 i0 100 0.172839506172839 28 0 17 0 10 37 994304 994277 MAG: Candidatus Bathyarchaeota archaeon isolate MFD03726.bin.1.102 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
12561630 12561630 PRJNA414036_P_NODE_40950_length_231_cov_5.596939_g39211_i0 PRJNA414036 40950 231 5.596939 12.92892909 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 122 1.55e-23   NTclustered gi|937513727|gb|CP012850.1| 1353260 g39211 i0 100 5.25108225108225 66 0 56 0 157 222 848885 848820 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 1213 122 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
14447646 14447646 PRJNA414036_P_NODE_43692_length_231_cov_3.714286_g41953_i0 PRJNA414036 43692 231 3.714286 8.58000066 uncultured crenarchaeote 29281 Archaea Archaea 126 1.2e-24   NTclustered gi|42601944|gb|AY454560.1| 29281 g41953 i0 100 60 68 0 58 0 8 75 1037 970 Uncultured crenarchaeote clone DI_D04 16S ribosomal RNA gene, partial sequence blastn 13860 126 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
31371347 31371347 PRJNA414036_P_NODE_84876_length_156_cov_0.917355_g83137_i0 PRJNA414036 84876 156 0.917355 1.4310738 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 43.9 0.00443   NR MBN1793151.1 2026803 g83137 i0 42.6 0.903846153846154 47 27 90.4 0 146 6 343 389 MBN1793151.1 carboxypeptidase regulatory-like domain-containing protein [Candidatus Woesearchaeota archaeon] diamond 141 43.9 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;