RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA414036", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1693676 1693676 PRJNA414036_P_NODE_78682_length_165_cov_2.423077_g76943_i0 PRJNA414036 78682 165 2.423077 3.99807705 Staphylothermus marinus 2280 Archaea Archaea 52.8 0.014   NTclustered gi|126013736|gb|CP000575.1| 399550 g76943 i0 100 0.16969696969697 28 0 17 0 25 52 416759 416786 Staphylothermus marinus F1, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus
14447646 14447646 PRJNA414036_P_NODE_43692_length_231_cov_3.714286_g41953_i0 PRJNA414036 43692 231 3.714286 8.58000066 uncultured crenarchaeote 29281 Archaea Archaea 126 1.2e-24   NTclustered gi|42601944|gb|AY454560.1| 29281 g41953 i0 100 60 68 0 58 0 8 75 1037 970 Uncultured crenarchaeote clone DI_D04 16S ribosomal RNA gene, partial sequence blastn 13860 126 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;