RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA414036" and tax_phylum = "Commensaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Commensaviricota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414036 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4245788 4245788 PRJNA414036_P_NODE_30424_length_272_cov_1.907173_g28688_i0 PRJNA414036 30424 272 1.907173 5.18751056 Torque teno sus virus 869560 Viruses Viruses 54.7 0.007   NTclustered gi|1810960846|gb|MN272091.1| 869560 g28688 i0 100 0.106617647058824 29 0 11 0 12 40 1765 1737 Torque teno sus virus isolate TTV_LV31 ORF1 gene, complete cds blastn 29 54.7 1 Viruses   Shotokuvirae Commensaviricota Cardeaviricetes Sanitavirales Anelloviridae Iotatorquevirus Torque teno sus virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;