RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA414036", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 12 ✖

tax_phylum 1

  • Campylobacterota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414036 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
418751 418751 PRJNA414036_P_NODE_38701_length_237_cov_1.811881_g36962_i0 PRJNA414036 38701 237 1.811881 4.29415797 Campylobacter sp. RM16704 1500960 Bacteria Bacteria 54.7 0.006   NTclustered gi|744807575|gb|CP007769.1| 1500960 g36962 i0 92.105 0.160337552742616 38 3 16 0 195 232 204249 204212 Campylobacter sp. RM16704 chromosome, complete genome blastn 38 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. RM16704
2969420 2969420 PRJNA414036_P_NODE_26943_length_290_cov_10.250980_g25208_i0 PRJNA414036 26943 290 10.25098 29.727842 Candidatus Thiovulum stygium 2951083 Bacteria Bacteria 154 7.160000000000001e-33   NTclustered gi|2182967327|gb|CP091137.1| 2951083 g25208 i0 81.868 132.068965517241 182 33 63 0 1 182 564567 564386 MAG: Candidatus Thiovulum stygium isolate 07-Movile_MetG_Ill chromosome, complete genome blastn 38300 154 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Thiovulum Candidatus Thiovulum stygium
2969450 2969450 PRJNA414036_P_NODE_34903_length_251_cov_6.875000_g33167_i0 PRJNA414036 34903 251 6.875 17.25625 Campylobacter jejuni 197 Bacteria Bacteria 52.8 0.023   NTclustered gi|1829615825|gb|CP048760.1| 197 g33167 i0 96.875 0.127490039840637 32 0 13 1 98 129 777635 777605 Campylobacter jejuni strain ZS005 chromosome, complete genome blastn 32 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
2969588 2969588 PRJNA414036_P_NODE_88103_length_151_cov_3.387931_g86364_i0 PRJNA414036 88103 151 3.387931 5.11577581 Helicobacter bizzozeronii 56877 Bacteria Bacteria 52.8 0.012   NTclustered gi|335332259|emb|FR871757.1| 1002804 g86364 i0 100 0.185430463576159 28 0 19 0 72 99 519604 519631 Helicobacter bizzozeronii CIII-1 main chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bizzozeronii
10010927 10010927 PRJNA414036_P_NODE_1548_length_668_cov_10.505529_g1231_i0 PRJNA414036 1548 668 10.505529 70.17693372 Campylobacter 194 Bacteria Bacteria 241 1.32e-58   NTclustered gi|1883582428|gb|CP059437.1| 196 g1231 i0 88.177 119.053892215569 203 23 42 1 261 462 135969 136171 Campylobacter fetus strain CFViADRI545 chromosome, complete genome blastn 79528 241 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus
12561709 12561709 PRJNA414036_P_NODE_7610_length_469_cov_14.278802_g6327_i0 PRJNA414036 7610 469 14.278802 66.96758138 Campylobacter 194 Bacteria Bacteria 252 4.1899999999999995e-62   NTclustered gi|1883582428|gb|CP059437.1| 196 g6327 i0 83.895 192.865671641791 267 40 74 3 196 460 136171 135906 Campylobacter fetus strain CFViADRI545 chromosome, complete genome blastn 90454 252 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus
13836312 13836312 PRJNA414036_P_NODE_14031_length_390_cov_12.338028_g12375_i0 PRJNA414036 14031 390 12.338028 48.1183092 Campylobacter 194 Bacteria Bacteria 364 4.219999999999998e-96   NTclustered gi|1861376917|gb|CP053828.1| 91353 g12375 i0 88.818 244.725641025641 313 13 95 3 75 386 361261 360970 Campylobacter hyointestinalis subsp. lawsonii strain CHY5 chromosome, complete genome blastn 95443 364 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis
20209075 20209075 PRJNA414036_P_NODE_31316_length_267_cov_9.064655_g29580_i0 PRJNA414036 31316 267 9.064655 24.20262885 Campylobacter 194 Bacteria Bacteria 189 1.78e-43   NTclustered gi|1883582428|gb|CP059437.1| 196 g29580 i0 99.048 156.176029962547 105 1 39 0 10 114 136884 136780 Campylobacter fetus strain CFViADRI545 chromosome, complete genome blastn 41699 189 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus
24034726 24034726 PRJNA414036_P_NODE_71119_length_180_cov_8.013793_g69380_i0 PRJNA414036 71119 180 8.013793 14.4248274 Campylobacter 194 Bacteria Bacteria 172 1.1199999999999999e-38   NTclustered gi|1207769205|gb|MF351718.1| 199 g69380 i0 100 134.188888888889 93 0 52 0 80 172 1694 1786 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 24154 172 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
25309065 25309065 PRJNA414036_P_NODE_36940_length_243_cov_3.620192_g35204_i0 PRJNA414036 36940 243 3.620192 8.79706656 Campylobacter 194 Bacteria Bacteria 145 3.51e-30   NTclustered gi|2323232558|gb|CP109813.1| 195 g35204 i0 100 74.4691358024691 78 0 32 0 10 87 43247 43324 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 18096 145 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
28243933 28243933 PRJNA414036_P_NODE_42866_length_231_cov_4.066327_g41127_i0 PRJNA414036 42866 231 4.066327 9.39321537 Helicobacter pylori 210 Bacteria Bacteria 42.4 0.00385   NR GAA9259198.1 210 g41127 i0 79.2 0.311688311688312 24 5 31.2 0 158 229 14 37 GAA9259198.1 hypothetical protein Kyoto199A_4160 [Helicobacter pylori] diamond 72 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32636036 32636036 PRJNA414036_P_NODE_77840_length_166_cov_147.541985_g76101_i0 PRJNA414036 77840 166 147.541985 244.9196951 Helicobacter felis ATCC 49179 936155 Bacteria Bacteria 83.6 9.07e-19   NR CBY83691.1 936155 g76101 i0 74.5 0.921686746987952 51 13 92.2 0 13 165 53 103 CBY83691.1 putative uncharacterized protein [Helicobacter felis ATCC 49179] diamond 153 83.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;