RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA414036", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA414036 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9346877 9346877 PRJNA414036_P_NODE_33168_length_259_cov_2.151786_g31432_i0 PRJNA414036 33168 259 2.151786 5.57312574 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.007   NTclustered gi|321531085|gb|HQ539202.1| 11676 g31432 i0 100 0.111969111969112 29 0 11 0 68 96 63 35 HIV-1 isolate MOVL183 from Singapore pol protein (pol) gene, partial cds blastn 29 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
10011028 10011028 PRJNA414036_P_NODE_51488_length_231_cov_1.959184_g49749_i0 PRJNA414036 51488 231 1.959184 4.52571504 Viruses 10239 Viruses Viruses 124 4.31e-24   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g49749 i0 100 30.4891774891775 67 0 58 0 9 75 3916 3850 Moloney murine leukemia virus, complete genome blastn 7043 124 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10622543 10622543 PRJNA414036_P_NODE_13909_length_391_cov_16.362360_g12255_i0 PRJNA414036 13909 391 16.36236 63.9768276 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.037   NTclustered gi|2125449230|gb|MW732907.1| 11676 g12255 i0 100 0.0716112531969309 28 0 7 0 285 312 1410 1437 HIV-1 isolate D19514 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) and rev protein (rev) genes, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
19544455 19544455 PRJNA414036_P_NODE_13496_length_395_cov_16.533333_g11854_i0 PRJNA414036 13496 395 16.533333 65.30666535 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.038   NTclustered gi|2125449230|gb|MW732907.1| 11676 g11854 i0 100 0.0708860759493671 28 0 7 0 289 316 1410 1437 HIV-1 isolate D19514 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) and rev protein (rev) genes, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;