RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA414036", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

  • Fungi · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA414036 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7460791 7460791 PRJNA414036_P_NODE_20106_length_336_cov_178.009967_g18380_i0 PRJNA414036 20106 336 178.009967 598.11348912 Fungi 4751 Fungi Fungi 431 3.479999999999999e-116   NTclustered gi|387156428|emb|HE806161.1| 1229259 g18380 i0 89.941 100.535714285714 338 28 99 6 1 335 802 1136 Uncultured Chytridium partial 26S rRNA gene, clone EopYyyy3 blastn 33780 431 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae   uncultured Chytridium
22095104 22095104 PRJNA414036_P_NODE_21878_length_323_cov_790.416667_g20150_i0 PRJNA414036 21878 323 790.416667 2553.04583441 Neocallimastigales sp. 2588918 Fungi Fungi 124 6.34e-24   NTclustered gi|2247392096|gb|ON650586.1| 2588918 g20150 i0 85.124 3.28482972136223 121 18 37 0 16 136 362 242 Neocallimastigales sp. clone 38 i2 large subunit ribosomal RNA gene, partial sequence blastn 1061 124 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales     Neocallimastigales sp.
29065166 29065166 PRJNA414036_P_NODE_7648_length_469_cov_3.237327_g6357_i0 PRJNA414036 7648 469 3.237327 15.18306363 Gonapodya prolifera JEL478 1344416 Fungi Fungi 70.1 2.19e-11   NR KXS17199.1 1344416 g6357 i0 49.5 0.646055437100213 101 43 64.6 2 11 313 109 201 KXS17199.1 hypothetical protein M427DRAFT_97187, partial [Gonapodya prolifera JEL478] diamond 303 70.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
31813931 31813931 PRJNA414036_P_NODE_22997_length_316_cov_3.704626_g21266_i0 PRJNA414036 22997 316 3.704626 11.70661816 Nowakowskiella sp. JEL 2012159 Fungi Fungi 42.7 0.0391   NR KAJ3121626.1 2732418 g21266 i0 56.1 0.778481012658228 41 18 38.9 0 306 184 16 56 KAJ3121626.1 Component of the SF3b subcomplex of the U2 snRNP [Nowakowskiella sp. JEL0407] diamond 246 42.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JEL0407
32242244 32242244 PRJNA414036_P_NODE_4618_length_531_cov_6.379032_g3756_i0 PRJNA414036 4618 531 6.379032 33.87265992 Opisthokonta 33154 Fungi Fungi 75.1 2.78e-13   NR KAJ3255448.1 261099 g3756 i0 58.9 3.15819209039548 56 23 31.6 0 177 10 6 61 KAJ3255448.1 Rho GTPase protein rac1 [Boothiomyces macroporosus] diamond 1677 75.5 0.994701986754967 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus
32415251 32415251 PRJNA414036_P_NODE_64279_length_200_cov_9.872727_g62540_i0 PRJNA414036 64279 200 9.872727 19.745454 Synchytrium endobioticum 286115 Fungi Fungi 84 5.28e-17   NR TPX41467.1 286115 g62540 i0 72.5 2.355 51 14 76.5 0 11 163 92 142 TPX41467.1 hypothetical protein SeMB42_g05560 [Synchytrium endobioticum] diamond 471 84 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
32762188 32762188 PRJNA414036_P_NODE_28080_length_284_cov_3.706827_g26345_i0 PRJNA414036 28080 284 3.706827 10.52738868 Cladochytrium replicatum 109936 Fungi Fungi 65.1 8.5e-10   NR KAI8809830.1 109936 g26345 i0 57.1 5.30281690140845 63 26 65.5 1 1 186 391 453 KAI8809830.1 ribonucleotide reductase alpha subunit [Cladochytrium replicatum] diamond 1506 65.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;