RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA414036", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4245823 4245823 PRJNA414036_P_NODE_41624_length_231_cov_4.831633_g39885_i0 PRJNA414036 41624 231 4.831633 11.16107223 Candidatus Stammera capleta 2608262 Bacteria Bacteria 84.2 7.32e-12   NTclustered gi|2676815326|gb|CP144802.1| 2608262 g39885 i0 91.803 6.81818181818182 61 4 26 1 114 174 32051 32110 MAG: Candidatus Stammera capleta isolate HDEGCJIM chromosome blastn 1575 84.2 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
16996155 16996155 PRJNA414036_P_NODE_31414_length_267_cov_3.258621_g29678_i0 PRJNA414036 31414 267 3.258621 8.70051807 Candidatus Dasytiphilus stammeri 1895663 Bacteria Bacteria 99 3.09e-16   NTclustered gi|2689070925|gb|CP145875.1| 1895663 g29678 i0 92.647 30.3520599250936 68 5 25 0 5 72 376877 376944 MAG: Candidatus Dasytiphilus stammeri isolate Dsem chromosome blastn 8104 99 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Dasytiphilus Candidatus Dasytiphilus stammeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;