RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA414036", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA414036 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22095215 22095215 PRJNA414036_P_NODE_51658_length_231_cov_1.923469_g49919_i0 PRJNA414036 51658 231 1.923469 4.44321339 Sphaerastrum fockii 299901 Root_unresolved Root_unresolved 122 1.55e-23   NTclustered gi|61187370|gb|AY752991.1| 299901 g49919 i0 100 5.98701298701299 66 0 53 0 157 222 1936 2001 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 1383 122 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii
30328838 30328838 PRJNA414036_P_NODE_63432_length_203_cov_6.857143_g61693_i0 PRJNA414036 63432 203 6.857143 13.92000029 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 95.9 4.28e-21   NR KOO32473.1 1460289 g61693 i0 74.6 407.793103448276 63 16 93.1 0 6 194 1809 1871 KOO32473.1 pre-mRNA-processing-splicing factor 8 [Chrysochromulina tobinii] diamond 82782 95.9 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
30517893 30517893 PRJNA414036_P_NODE_5293_length_515_cov_5.339583_g4332_i0 PRJNA414036 5293 515 5.339583 27.49885245 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 56.2 8.54e-6   NR KOO27437.1 1460289 g4332 i0 37.1 0.56504854368932 97 51 56.5 1 71 361 225 311 KOO27437.1 t-complex protein 1 subunit alpha [Chrysochromulina tobinii] diamond 291 56.2 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;