RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA408129" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA408129 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15721095 15721095 PRJNA408129_S_NODE_21273_length_175_cov_4.217391_g21255_i0 PRJNA408129 21273 175 4.217391 7.38043425 uncultured Haliangium sp. 373538 Bacteria Bacteria 211 2.3e-50   NTclustered gi|310755276|gb|HQ213166.1| 373538 g21255 i0 97.561 59.4742857142857 123 3 70 0 39 161 1078 956 Uncultured Haliangium sp. clone 3_E01 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 10408 211 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium uncultured Haliangium sp.
27945077 27945077 PRJNA408129_S_NODE_5425_length_261_cov_9.071429_g5407_i0 PRJNA408129 5425 261 9.071429 23.67642969 Bacteria 2 Bacteria Bacteria 62.4 5.32e-9   NR HAC80999.1 2026735 g5407 i0 49.1 2.02298850574713 57 29 65.5 0 261 91 322 378 HAC80999.1 multidrug MFS transporter [Deltaproteobacteria bacterium] diamond 528 62.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28528481 28528481 PRJNA408129_S_NODE_4687_length_272_cov_2.446809_g4669_i0 PRJNA408129 4687 272 2.446809 6.65532048 Polyangiaceae bacterium 2268199 Bacteria Bacteria 80.9 2.02e-15   NR HMJ55123.1 2268199 g4669 i0 46.3 0.904411764705882 82 42 90.4 1 7 252 151 230 HMJ55123.1 PAS domain-containing sensor histidine kinase [Polyangiaceae bacterium] diamond 246 80.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29191435 29191435 PRJNA408129_S_NODE_17349_length_187_cov_1.753333_g17331_i0 PRJNA408129 17349 187 1.753333 3.27873271 Sorangium cellulosum 56 Bacteria Bacteria 64.3 4.35e-10   NR KYF56806.1 56 g17331 i0 54.5 0.882352941176471 55 25 88.2 0 165 1 38 92 KYF56806.1 phosphoesterase [Sorangium cellulosum] diamond 165 64.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
30629122 30629122 PRJNA408129_S_NODE_4333_length_278_cov_2.609959_g4315_i0 PRJNA408129 4333 278 2.609959 7.25568602 Bacteria 2 Bacteria Bacteria 42 0.0129   NR HSD22469.1 1872521 g4315 i0 44.7 0.949640287769784 47 21 45.3 2 200 75 2 48 HSD22469.1 hypothetical protein [Anaeromyxobacter sp.] diamond 264 42.4 0.990566037735849 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.
32162120 32162120 PRJNA408129_S_NODE_10438_length_219_cov_2.351648_g10420_i0 PRJNA408129 10438 219 2.351648 5.15010912 Polyangiaceae bacterium 2268199 Bacteria Bacteria 55.1 1.16e-7   NR HEY8040315.1 2268199 g10420 i0 59.2 2.71232876712329 49 19 67.1 1 218 72 54 101 HEY8040315.1 hypothetical protein [Polyangiaceae bacterium] diamond 594 55.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;