RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA408129" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA408129 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14447384 14447384 PRJNA408129_S_NODE_33452_length_153_cov_2.844828_g33434_i0 PRJNA408129 33452 153 2.844828 4.35258684 Mycoplasma mycoides 2102 Bacteria Bacteria 52.8 0.013   NTclustered gi|2040377405|gb|CP065586.1| 40477 g33434 i0 100 0.73202614379085 28 0 18 0 84 111 847505 847532 Mycoplasma mycoides subsp. capri strain 171/93 chromosome, complete genome blastn 112 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
15721218 15721218 PRJNA408129_S_NODE_5133_length_265_cov_6.175439_g5115_i0 PRJNA408129 5133 265 6.175439 16.36491335 Metamycoplasma alkalescens 45363 Bacteria Bacteria 52.8 0.024   NTclustered gi|1450418660|emb|LS991949.1| 45363 g5115 i0 94.118 0.128301886792453 34 2 13 0 179 212 677562 677595 Mycoplasma alkalescens strain NCTC10135 genome assembly, chromosome: 1 blastn 34 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;