RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA408129", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Kitrinoviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA408129 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9346446 9346446 PRJNA408129_S_NODE_14608_length_197_cov_3.081250_g14590_i0 PRJNA408129 14608 197 3.08125 6.0700625 Erysiphe necator associated deltaflexivirus 4 2743097 Viruses Viruses 289 1.1899999999999998e-73   NTclustered gi|2288523299|gb|ON811606.1| 2743097 g14590 i0 95.556 5.41116751269035 180 8 91 0 18 197 6765 6944 MAG: Erysiphe necator associated deltaflexivirus 4 isolate TIGMIC_2, complete genome blastn 1066 289 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Erysiphe necator associated deltaflexivirus 4
14447247 14447247 PRJNA408129_S_NODE_15532_length_193_cov_4.153846_g15514_i0 PRJNA408129 15532 193 4.153846 8.01692278 Erysiphe necator associated deltaflexivirus 4 2743097 Viruses Viruses 318 1.4899999999999995e-82   NTclustered gi|2288523299|gb|ON811606.1| 2743097 g15514 i0 97.838 0.958549222797927 185 3 96 1 9 193 7113 6930 MAG: Erysiphe necator associated deltaflexivirus 4 isolate TIGMIC_2, complete genome blastn 185 318 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Erysiphe necator associated deltaflexivirus 4
18270107 18270107 PRJNA408129_S_NODE_33875_length_152_cov_11.208696_g33857_i0 PRJNA408129 33875 152 11.208696 17.03721792 Tobamovirus tabaci 3432891 Viruses Viruses 265 1.47e-66   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g33857 i0 100 94.0723684210526 143 0 94 0 10 152 3663 3805 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 14299 265 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
22094751 22094751 PRJNA408129_S_NODE_1478_length_355_cov_4.962264_g1460_i0 PRJNA408129 1478 355 4.962264 17.6160372 Triticum polonicum deltaflexivirus 1 2794417 Viruses Viruses 531 3.5399999999999993e-146   NTclustered gi|1950492753|gb|MW328746.1| 2794417 g1460 i0 94.509 7.29577464788732 346 15 97 4 13 355 8103 7759 Triticum polonicum deltaflexivirus 1 RdRp, HP2, HP3, and HP4 genes, complete cds blastn 2590 531 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Triticum polonicum deltaflexivirus 1
22094935 22094935 PRJNA408129_S_NODE_4358_length_277_cov_9.512500_g4340_i0 PRJNA408129 4358 277 9.5125 26.349625 Potexvirus pepini 3433856 Viruses Viruses 510 3.5e-140   NTclustered gi|375808845|gb|JN835466.1| 112229 g4340 i0 100 95.2274368231047 276 0 99 0 1 276 6412 6137 Pepino mosaic virus strain CH2, complete genome blastn 26378 510 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;