RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA408129" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1082736 1082736 PRJNA408129_S_NODE_34741_length_151_cov_5.491228_g34723_i0 PRJNA408129 34741 151 5.4912280000000004 8.29175428 Oxytricha 5943 SAR_Eukaryotes SAR_Eukaryotes 244 1.89e-60   NTclustered gi|1859609462|gb|MT640772.1| 305490 g34723 i0 97.872 93.3774834437086 141 3 93 0 11 151 11 151 Uncultured Hypotrichia clone OTU55.1 large subunit ribosomal RNA gene, partial sequence blastn 14100 244 1 Eukaryota Sar   Ciliophora Spirotrichea       uncultured Hypotrichia
6796211 6796211 PRJNA408129_S_NODE_2746_length_311_cov_3.791971_g2728_i0 PRJNA408129 2746 311 3.791971 11.79302981 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 122 2.1799999999999999e-23   NTclustered gi|47176510|gb|AY618090.1| 94289 g2728 i0 88.889 12.1736334405145 99 11 32 0 24 122 385 287 Sterkiella histriomuscorum clone UGC1O0004_I02_R genomic sequence blastn 3786 122 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
11286077 11286077 PRJNA408129_S_NODE_6229_length_251_cov_43.733645_g6211_i0 PRJNA408129 6229 251 43.733645 109.77144895 root 1 Root_unresolved Root_unresolved 388 1.5299999999999998e-103   NTclustered gi|10832|emb|X54512.1| 5911 g6211 i0 99.078 77.2231075697211 217 1 86 1 28 243 8330 8114 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 19383 388 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
11897160 11897160 PRJNA408129_S_NODE_10550_length_218_cov_4.348066_g10532_i0 PRJNA408129 10550 218 4.348066 9.47878388 Platyophryides magnus 1003332 SAR_Eukaryotes SAR_Eukaryotes 337 4.7499999999999994e-88   NTclustered gi|328684914|gb|HM122030.1| 1003332 g10532 i0 94.954 98.8348623853211 218 6 99 5 3 218 49 263 Platyophryides magnus isolate SNK09112401 macronuclear blastn 21546 337 1 Eukaryota Sar   Ciliophora Colpodea Cyrtolophosidida Platyophryidae Platyophryides Platyophryides magnus
14447467 14447467 PRJNA408129_S_NODE_8332_length_233_cov_4.168367_g8314_i0 PRJNA408129 8332 233 4.168367 9.71229511 Paramecium polycaryum 109354 SAR_Eukaryotes SAR_Eukaryotes 374 3.9199999999999994e-99   NTclustered gi|1409630804|gb|MG953266.1| 109354 g8314 i0 98.14 90.2231759656652 215 2 91 1 15 227 586 800 Paramecium polycaryum isolate ChY12-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21022 374 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium polycaryum
16995924 16995924 PRJNA408129_S_NODE_3034_length_303_cov_29.409774_g3016_i0 PRJNA408129 3034 303 29.409774 89.11161522 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 425 1.44e-114   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g3016 i0 94.565 8.42904290429043 276 13 91 2 17 291 362 88 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2554 425 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
17660313 17660313 PRJNA408129_S_NODE_32414_length_154_cov_9.333333_g32396_i0 PRJNA408129 32414 154 9.333333 14.37333282 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 274 2.48e-69   NTclustered gi|1837628855|gb|MN158348.1| 5909 g32396 i0 98.701 97.8701298701299 154 2 100 0 1 154 2782 2935 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15072 274 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
30960274 30960274 PRJNA408129_S_NODE_11194_length_214_cov_5.971751_g11176_i0 PRJNA408129 11194 214 5.971751 12.77954714 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 59.7 1.58e-9   NR ABU80576.1 94289 g11176 i0 79.4 1.00934579439252 34 7 47.7 0 203 102 60 93 ABU80576.1 ribosomal protein L44 [Sterkiella histriomuscorum] diamond 216 59.7 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;