RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA408129" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27991644 27991644 PRJNA408129_S_NODE_24705_length_167_cov_6.053846_g24687_i0 PRJNA408129 24705 167 6.053846 10.10992282 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 41.6 0.0349   NR RKV98313.1 1917697 g24687 i0 44.2 0.934131736526946 52 26 88 1 163 17 379 430 RKV98313.1 MAG: hypothetical protein D8G53_03085 [Candidatus Saccharimonas sp.] diamond 156 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
28023177 28023177 PRJNA408129_S_NODE_19965_length_179_cov_2.253521_g19947_i0 PRJNA408129 19965 179 2.253521 4.03380259 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 102 2.07e-23   NR MBH2007265.1 2026720 g19947 i0 79.7 1.97765363128492 59 12 98.9 0 1 177 430 488 MBH2007265.1 leucine--tRNA ligase [Candidatus Saccharibacteria bacterium] diamond 354 102 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30960275 30960275 PRJNA408129_S_NODE_12854_length_205_cov_4.880952_g12836_i0 PRJNA408129 12854 205 4.880952 10.0059516 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 47.4 3.13e-5   NR HET8709174.1 2973664 g12836 i0 79.4 0.497560975609756 34 6 49.8 1 184 83 3 35 HET8709174.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 102 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;