RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA408129" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32856589 32856589 PRJNA408129_S_NODE_5520_length_260_cov_4.210762_g5502_i0 PRJNA408129 5520 260 4.210762 10.9479812 Candidatus Collierbacteria bacterium RIFCSPHIGHO2_ 2053540 Bacteria Bacteria 41.6 0.0311   NR OGD71529.1 1817723 g5502 i0 47.4 0.438461538461538 38 20 43.8 0 147 260 24 61 OGD71529.1 MAG: hypothetical protein A3D09_02205 [Candidatus Collierbacteria bacterium RIFCSPHIGHO2_02_FULL_49_10] diamond 114 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium RIFCSPHIGHO2_02_FULL_49_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;