RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA408129" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27517944 27517944 PRJNA408129_S_NODE_7163_length_243_cov_3.213592_g7145_i0 PRJNA408129 7163 243 3.213592 7.80902856 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 44.7 0.00641   NR MDP5038834.1 2044595 g7145 i0 53.1 0.790123456790123 32 15 39.5 0 124 29 12 43 MDP5038834.1 rRNA pseudouridine synthase [Candidatus Altimarinota bacterium] diamond 192 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29570101 29570101 PRJNA408129_S_NODE_7070_length_244_cov_2.628019_g7052_i0 PRJNA408129 7070 244 2.628019 6.41236636 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 122 4.97e-30   NR MFA6079892.1 2044595 g7052 i0 93.8 0.786885245901639 64 4 78.7 0 193 2 280 343 MFA6079892.1 ATP-dependent DNA helicase [Candidatus Altimarinota bacterium] diamond 192 122 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;