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contig_metadata

16 rows where bioproject = "PRJNA408129", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 16 ✖

tax_phylum 1

  • Acidobacteriota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA408129 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2969297 2969297 PRJNA408129_S_NODE_8883_length_229_cov_4.046875_g8865_i0 PRJNA408129 8883 229 4.046875 9.26734375 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 268 1.86e-67   NTclustered gi|2874253852|emb|OY969908.1| 194844 g8865 i0 90.594 83.3231441048035 202 19 88 0 28 229 2169556 2169355 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09286.bin.1.44 genome assembly, chromosome: 1 blastn 19081 268 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
5522118 5522118 PRJNA408129_S_NODE_1465_length_355_cov_17712.261006_g1447_i0 PRJNA408129 1465 355 17712.261006 62878.5265713 Acidobacteriota bacterium 1978231 Bacteria Bacteria 155 1.41e-41   NR MDQ3714372.1 1978231 g1447 i0 88.2 0.71830985915493 85 10 71.8 0 343 89 141 225 MDQ3714372.1 hypothetical protein [Acidobacteriota bacterium] diamond 255 155 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
15721027 15721027 PRJNA408129_S_NODE_14053_length_199_cov_7.216049_g14035_i0 PRJNA408129 14053 199 7.216049 14.35993751 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 116 2.3199999999999993e-28   NR HYI94836.1 2212468 g14035 i0 90.9 0.994974874371859 66 6 99.5 0 2 199 59 124 HYI94836.1 hypothetical protein [Bryobacteraceae bacterium] diamond 198 116 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
26790797 26790797 PRJNA408129_S_NODE_21421_length_175_cov_2.384058_g21403_i0 PRJNA408129 21421 175 2.384058 4.1721015 Acidobacteriota bacterium 1978231 Bacteria Bacteria 110 2.26e-26   NR MBS1795208.1 1978231 g21403 i0 81 0.994285714285714 58 11 99.4 0 175 2 470 527 MBS1795208.1 hypothetical protein [Acidobacteriota bacterium] diamond 174 110 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26822524 26822524 PRJNA408129_S_NODE_10021_length_221_cov_8.184783_g10003_i0 PRJNA408129 10021 221 8.184783 18.08837043 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 49.7 5.64e-6   NR HLN99585.1 2283092 g10003 i0 70.7 0.556561085972851 41 12 55.7 0 44 166 1 41 HLN99585.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 123 49.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
27328528 27328528 PRJNA408129_S_NODE_26603_length_164_cov_1.818898_g26585_i0 PRJNA408129 26603 164 1.818898 2.98299272 Acidobacteriota bacterium 1978231 Bacteria Bacteria 87.4 2.29e-18   NR MBI4904732.1 1978231 g26585 i0 71.7 0.969512195121951 53 15 97 0 3 161 249 301 MBI4904732.1 S9 family peptidase [Acidobacteriota bacterium] diamond 159 87.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27517943 27517943 PRJNA408129_S_NODE_4623_length_273_cov_2.830508_g4605_i0 PRJNA408129 4623 273 2.830508 7.72728684 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 43.1 0.0378   NR HXN49145.1 2212468 g4605 i0 41.3 0.692307692307692 63 31 62.6 1 18 188 397 459 HXN49145.1 immunoglobulin-like domain-containing protein [Bryobacteraceae bacterium] diamond 189 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
27580982 27580982 PRJNA408129_S_NODE_7984_length_236_cov_3.502513_g7966_i0 PRJNA408129 7984 236 3.502513 8.26593068 Acidobacteriota bacterium 1978231 Bacteria Bacteria 107 1.09e-25   NR MEP7038772.1 1978231 g7966 i0 70.4 0.902542372881356 71 21 90.3 0 215 3 1 71 MEP7038772.1 carbohydrate binding domain-containing protein [Acidobacteriota bacterium] diamond 213 107 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28418831 28418831 PRJNA408129_S_NODE_17026_length_188_cov_1.980132_g17008_i0 PRJNA408129 17026 188 1.980132 3.72264816 Pseudomonadati 3379134 Bacteria Bacteria 69.3 5.92e-12   NR PYP86624.1 2169412 g17008 i0 75 5.74468085106383 40 10 63.8 0 144 25 1 40 PYP86624.1 MAG: alcohol dehydrogenase [Candidatus Angelobacter sp. Gp1-AA117] diamond 1080 69.7 0.994261119081779 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp. Gp1-AA117
30612520 30612520 PRJNA408129_S_NODE_4853_length_269_cov_4.818966_g4835_i0 PRJNA408129 4853 269 4.818966 12.96301854 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 144 7.599999999999999e-38   NR HYI95960.1 2212468 g4835 i0 89.5 0.95910780669145 86 9 95.9 0 267 10 1 86 HYI95960.1 hypothetical protein [Bryobacteraceae bacterium] diamond 258 144 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31402933 31402933 PRJNA408129_S_NODE_6936_length_245_cov_3.288462_g6918_i0 PRJNA408129 6936 245 3.288462 8.0567319 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 148 2.4e-42   NR HYI92616.1 2212468 g6918 i0 90.1 0.991836734693878 81 8 99.2 0 3 245 142 222 HYI92616.1 PAS domain S-box protein [Bryobacteraceae bacterium] diamond 243 148 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31434304 31434304 PRJNA408129_S_NODE_30196_length_158_cov_1.066116_g30178_i0 PRJNA408129 30196 158 1.066116 1.68446328 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 44.3 0.00336   NR HUR81816.1 2651171 g30178 i0 45.1 0.968354430379747 51 26 96.8 2 155 3 57 105 HUR81816.1 ATP-binding protein [Thermoanaerobaculia bacterium] diamond 153 44.3 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31877034 31877034 PRJNA408129_S_NODE_20097_length_178_cov_7.028369_g20079_i0 PRJNA408129 20097 178 7.028369 12.51049682 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 95.9 3.68e-22   NR WP_239488721.1 2802971 g20079 i0 87.3 1.85393258426966 55 7 92.7 0 10 174 24 78 WP_239488721.1 translation elongation factor Ts [Luteitalea sp. TBR-22] diamond 330 95.9 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
32130520 32130520 PRJNA408129_S_NODE_29238_length_159_cov_3.655738_g29220_i0 PRJNA408129 29238 159 3.655738 5.81262342 Acidobacteriota bacterium 1978231 Bacteria Bacteria 75.5 2.94e-14   NR MCU1287826.1 1978231 g29220 i0 72 0.943396226415094 50 14 94.3 0 158 9 207 256 MCU1287826.1 hypothetical protein [Acidobacteriota bacterium] diamond 150 75.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32463539 32463539 PRJNA408129_S_NODE_23739_length_169_cov_8.083333_g23721_i0 PRJNA408129 23739 169 8.083333 13.66083277 Luteitalea 2004797 Bacteria Bacteria 83.2 2.68e-17   NR WP_110173983.1 1855912 g23721 i0 75.5 3.71005917159763 53 13 94.1 0 11 169 192 244 WP_110173983.1 YMGG-like glycine zipper-containing protein [Luteitalea pratensis] diamond 627 83.6 0.995215311004785 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
32730780 32730780 PRJNA408129_S_NODE_16320_length_190_cov_4.078431_g16302_i0 PRJNA408129 16320 190 4.078431 7.7490189 Blastocatellia bacterium 2052146 Bacteria Bacteria 101 4.3e-26   NR HMY76456.1 2052146 g16302 i0 76.7 0.947368421052632 60 14 94.7 0 181 2 20 79 HMY76456.1 YCF48-related protein [Blastocatellia bacterium] diamond 180 101 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;